Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi304g00056 ATGACTTCCTTTTTGAGAGCCGACAGCGGCCATAAACGGACGAGCAGGCCTTTCCCTTCGAGATCTCGTAGCAGGCCTTTCTCTTCGAGATCTCGTAGTGATACTCGAAATGCCATTCATTTTCAAGAACAATTTTTCAGGGATGAAGAAATAAAAAGTGAGCAAGAAGATATGAGAAAAACACCATTAAAAATATACGAAGTTTTTCTAAGTTTCAGAGGCGAAGACACTCGTTCTTCCTTCATTTCGCATCTCTATGCTTCTCTTCAAAACGCCGGAATCAATGTTTTCAAGGATGATGACTCGCTTAAAAGAGGAAATGACATTTCAGCTTCATTACTGCGAGCAATTGAAGGATCTCAAATTGCTCTGATAGTTTTTTCGACAAACTATGCGAATTCGCAATGGTGTCTGGATGAGTTGGTGAAGATAATGGAGTGTCACGGAACCCTGAGTCAGGTGGTGGTGCTGCCGGTTTTTTATGACGTAGATCCTTCTGATGTTCGTCACCAAACGGGTGAGTTTGGAAAAGCATTTCATAGTCTTTTGAAGAGGATTTCAAAAAAGGAAGGACTCTATAGAAAGGTTGCAAATGCGTTTAAAAATGTTGTGAGCTGTTTGTTAAAGAGTAAAGACGAGTCTCCTAGTCGAGTTCAGAGATGGAAAGAAGCCCTTGGTCAAGCAGCCGGACTTGCAGGGTTTGTAGTGCTAAATTCCAGGAATCAAAGTGAGGTTATCAAGGAAATTGTTGAAAAAACTACACTTTTGCTAGACAAGACAGACATGTTTGTTGCCAATCATCCCGTGGGAGTTGAACCTCGGGTGCATGATATGATTCAACTGTTAGACATCCAACCGTCCATCCAACAATCAAGTGATGTTCTACTAATAGGCATGTGGGGTATGGGAGGAATGGGAAAAACCACTATTGCAAAAGCCATTTATAATAAAATTGGCCGTTGTTTTGAAGGTAGGAGCTTCCTTGCAAATATTAGGGAAGTTTGGGAACAAAATGTTGGACAAGTGTCTTTACAAGAACAAATTCTTTTTGATATCTATAAAGAAACAACAACAGGGATACAAAACACTGACCAAGGAAAAAGTATATTAAAGGATAAACTTTGCCATAAAAGAGTATTTCTCGTACTTGATGATGTGAATACATTGGATCAATTGAATGCTTTGTGTGGAGATCGGCAATGGTTTGGTTCAGGTAGTAGAATAATCATTACAACTAGAAATATGGATTTACTTAAAGGGAATAGAGTGGATAAATTTTACAATATGCAAGAAATGGATGAAAGAGAAACGATTGAGCTTTTAAGTTGGCACGCGTTCAAGCAAGTGAAACCTAAAGAAGTTTTTATTGAAATTTCCAAAAATGTTGTTGAGTATGCTGGGAGATTGCCACTAGCTTTAGAAGTTCTTGGGTCGTATTTGTATGGTAGGGAGGTAAAAGAGTGGGAGTGTGTATTGGACAAACTCAAAACAATCCCAAATGATCAAATTCAGAAGAAGTTAAGAATAAGCTACGATGGTTTGGAGGATGACACTCAGAAAGATATATTACTTGATATAGCTTGTTTCTTTATTGGAAAGGACCGGAATGATGTTATACATATATTAAATGAATGTGAACTTTATCCAGAAAATGGAATAAATATCCTTGTGGCGCGAAGTCTTGTGACGGTTGATGATACAAACAAACTTAGAATGCATGATTTGCTGCGAGATATGGGAAGAGAAATCACTCGTGAAAATTCACTCAAAAATCCCGAAAAGCATAGCAGGTTGTGGTTTAATAAGGATGTTCTTGAGGTATTATCAAAACGAACAGGAACAAAAGTTGAAGGACTTGCTTTGATGTTGCCAAGAGCTAGTACAGAATGTTTTAGTACTAAGGCATTTGAGAAAATGACCAGACTCAGATTGCTTCAACTTGATGGAGTAAAACTTAATGATGACTTTGAATATCTTTCAAAAAATTTGAGATGGCTTTCTTGGAATGGTTTTCCTTTAACATCTATACCTACAAGCTTTTATCTAAGAAATTTAGTTTCTATTGAGTTAGAAAACAGCAAAATCAAATATCTGTGGAATGACAAACAAACCCAGAGTCTAGAGAAACTAAAAATTCTCAATCTTAGTCATTCTCATTATCTCACAAAGACTCCCGACTTTTCAAAGTTACCTAATCTTGAACAATTAATACTTATTGATTGTCCAAGGTTGTCTGAAGTTTCCGATACTTTTGAATATAATAAAAAGGTTCTTCTGATCAATTTGGAAGATTGTATCAGCCTTCAAAGTCTTCCAAGAAGTCTCTATAAGCTGAAATCTCTAAAAACTCTCATCATTTCTGGATGTTCAAAGATTGACAAGTTGGAGGAGGATTTGGAACAGTTGGAATCATTAACCACCCTCATTGCAAATAACACTGCAATAACAAAAGTACCATTTTCGTTAGAAAAGTTACAAAAAATTGGATATATTTCTTTGTGCGGCTATGAAGGATTCCCAAGTGATGTGTTTCCATCTATCATCAAGTCTTGGACATCACCAAGAAATAATCTCTCATCCATTGTGCCTCTCAATGCACCTCGTAGTAGTTCCCTCGAGTTATCATCAATGTTTGAGTACCTTCCACAATGTCAATGTCTATGGGTGAAATGTGATTCAAAAGTTGATCTTTCTCGAAGCGCAAAAATAATTTTAAATGCTTTATCTGTCACAGATTCTGAAGAAATGGAACAAGTTCACATTTCAGGTTCAGAAACTTCCTTCAAACCTCGGTTTTTTCAAACTGGAGTGAATTGCGAAGTAACAGAAAGTCTAAAAGAGGAAATTTTACAGGGTAAGGGCGGGAGTCATCCATACTGCTTTAACTTCAACTGTGATGGTTCTTCTGTGAAATTTGAAGTTCCTATAGTGTTAGGGCGTAACTTGAACACAATTATGTGTGTTGTCTATCCTTCAACCCCGGATAACATAACATCAGATGACCCTATTAAAAGTGTGTTGGTGATAAATTACACAAAGGCCACCTTTATGCTTTTTAAGACCGAGGCATTAGCATCATTTGAAGATGAGGAGTTGCAAAGTGCAATATCAAGTATTCAAATTGGTAATAAAGTGGAATTTGTTGTTGTTTCTGAGAGCAATTTCGCTGTGAAGAGTACAAGAATTTATCTCATATATGATGGACCAATTCACAAAGAACTTGGTTTCATTAAATTTTCTTTGATCACTTGA 3252 0.3678 MTSFLRADSGHKRTSRPFPSRSRSRPFSSRSRSDTRNAIHFQEQFFRDEEIKSEQEDMRKTPLKIYEVFLSFRGEDTRSSFISHLYASLQNAGINVFKDDDSLKRGNDISASLLRAIEGSQIALIVFSTNYANSQWCLDELVKIMECHGTLSQVVVLPVFYDVDPSDVRHQTGEFGKAFHSLLKRISKKEGLYRKVANAFKNVVSCLLKSKDESPSRVQRWKEALGQAAGLAGFVVLNSRNQSEVIKEIVEKTTLLLDKTDMFVANHPVGVEPRVHDMIQLLDIQPSIQQSSDVLLIGMWGMGGMGKTTIAKAIYNKIGRCFEGRSFLANIREVWEQNVGQVSLQEQILFDIYKETTTGIQNTDQGKSILKDKLCHKRVFLVLDDVNTLDQLNALCGDRQWFGSGSRIIITTRNMDLLKGNRVDKFYNMQEMDERETIELLSWHAFKQVKPKEVFIEISKNVVEYAGRLPLALEVLGSYLYGREVKEWECVLDKLKTIPNDQIQKKLRISYDGLEDDTQKDILLDIACFFIGKDRNDVIHILNECELYPENGINILVARSLVTVDDTNKLRMHDLLRDMGREITRENSLKNPEKHSRLWFNKDVLEVLSKRTGTKVEGLALMLPRASTECFSTKAFEKMTRLRLLQLDGVKLNDDFEYLSKNLRWLSWNGFPLTSIPTSFYLRNLVSIELENSKIKYLWNDKQTQSLEKLKILNLSHSHYLTKTPDFSKLPNLEQLILIDCPRLSEVSDTFEYNKKVLLINLEDCISLQSLPRSLYKLKSLKTLIISGCSKIDKLEEDLEQLESLTTLIANNTAITKVPFSLEKLQKIGYISLCGYEGFPSDVFPSIIKSWTSPRNNLSSIVPLNAPRSSSLELSSMFEYLPQCQCLWVKCDSKVDLSRSAKIILNALSVTDSEEMEQVHISGSETSFKPRFFQTGVNCEVTESLKEEILQGKGGSHPYCFNFNCDGSSVKFEVPIVLGRNLNTIMCVVYPSTPDNITSDDPIKSVLVINYTKATFMLFKTEALASFEDEELQSAISSIQIGNKVEFVVVSESNFAVKSTRIYLIYDGPIHKELGFIKFSLIT 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi304g00056 1083 Gene3D - 431 515 IPR042197 -
Vivi304g00056 1083 PRINTS Disease resistance protein signature 373 387 - -
Vivi304g00056 1083 PRINTS Disease resistance protein signature 466 480 - -
Vivi304g00056 1083 PRINTS Disease resistance protein signature 705 721 - -
Vivi304g00056 1083 PRINTS Disease resistance protein signature 296 311 - -
Vivi304g00056 1083 Gene3D - 62 263 IPR035897 -
Vivi304g00056 1083 Gene3D - 264 425 IPR027417 -
Vivi304g00056 1083 MobiDBLite consensus disorder prediction 1 34 - -
Vivi304g00056 1083 SUPERFAMILY "Winged helix" DNA-binding domain 502 608 IPR036390 -
Vivi304g00056 1083 SUPERFAMILY Toll/Interleukin receptor TIR domain 64 182 IPR035897 -
Vivi304g00056 1083 Gene3D Ribonuclease Inhibitor 604 940 IPR032675 -
Vivi304g00056 1083 Coils Coil 792 812 - -
Vivi304g00056 1083 SUPERFAMILY L domain-like 620 892 - -
Vivi304g00056 1083 SMART till_3 65 203 IPR000157 GO:0007165
Vivi304g00056 1083 FunFam Disease resistance protein (TIR-NBS-LRR class) 63 259 - -
Vivi304g00056 1083 Pfam NB-ARC domain 290 508 IPR002182 GO:0043531
Vivi304g00056 1083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 525 IPR027417 -
Vivi304g00056 1083 ProSiteProfiles TIR domain profile. 64 257 IPR000157 GO:0007165
Vivi304g00056 1083 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 66 879 IPR044974 GO:0006952
Vivi304g00056 1083 Pfam TIR domain 66 251 IPR000157 GO:0007165
Vivi304g00056 1083 MobiDBLite consensus disorder prediction 20 34 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi304g00056 64 825 WRKY Transcription Factor Family AT4G12020 31.498 8.30e-83 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi304g00056 - - cam:101494533 1360.13