Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi304g00053 ATGGAAGATCCCTCACATCACACAGAAAATTTAGATGAAAGAGCCGAAGCATTTATTCACGAGTTTCAGAAAGCAATGATCCATGAAGAAAGTAGATCAACGATGCGTGAACATGAAGTGTTTCTAAGCTTCAGAGGAGAAGACACGCGCTCTTCCTTCACTTCACATCTCCATGCTTCTCTTCAAAACGAAGGAATTAAAGCTTTTAGAGACGACGATTCTCTGAAAAGAGGAGATCACATTTCAGCATCAATACATCAAGCAATTCAAAAATCTCAGATCTCTGTCATTGTTTTTTCAAGAACCTATGCTGATTCGCGATGGTGTCTCGATGAATTGGTGAAGATAATGGAGTGTCGTAGAACCATAGGGCAAGTGGTTTTGCCGGTGTTTTATGATGTTGATCCCTCGGAAGTTCGTCATCAATCTGGCGAGTTTGGAAAAGCATTTGGAAGTCTCTTGACTAGGCTTTCGAATAAGAAAGGGATTTATGATAGGTTTGGAAAAGCTGTTCGATATGTTTTGAAAAGTTTTTCAATGTATGACGAAGAGTCACCAAATCAGGAGCTGAGGTGGAGCTGGAGTGCCGCGCTTCGTGAGGCCGCAGGGCTTGCAGGATTTGTAGTACTAAATTCAAGGAATGAAAATGAGGCTATCAAGGATATTGTTGAAAAAGTTACACAATTGCTAGACAAGACAGACTTGTTTGTTGCTAATAATCCAGTGGGAGTTGAAACTCGAGTAAAAGATATGATTCAATTACTAGACATCCAACAATTAAATGATGTTCATTTAATAGGAATGTGGGGTATGGGAGGAATTGGCAAAACCACAATTGCAAAAGCCATTTACAATAAAATTGGCCGCAATTTTGAAGCTAGGAGCTTCCTTGCAAATACAAGGGAGGTTTGGGAGAAAAATGATGGACCAGTGTCTTTACAACAACAACTTCTCTTTGATATTTGCAAGGAATCAAAAACCAAGATTCAAAATATTGAGGCAGGAAAAATTATATTAACGGATAGACTTTGTGGCAAAAGAGTATTTCTTGTACTTGATGACGTGAGTACATTGGATCAATTGAATGCTTTGTGCGGAAGTCGTCAATGGTTTGGTTCAGGGAGTAGAATAATCATCACAACTAGAGATATGCATATACTTAGAGCTAATAGAGTTGACCAAATATACACAATGAAAGAAATGGATGAAAGTGAATCAATTGAGCTTTTTAGTTGGAATGCATTTAAGCAAGCAAGCCCTAGAGAAGATTTTGCAGGAATTTCCCAAAATGTAGTGGAGTATTCGGGGCAATTGCCGCTAGCTCTAGAAGTCCTCGGGTCTTATTTGTGTGATAGGGGGATAACAGAATGGAAGTGTGTATTGGACAAGCTCAAAAGAATTCCAAATGATCAAGTGCAGAAGAAGTTAAAAATAAGCTATGATGGTTTAAATGATGATTTTGAGAAAGAAATATTCCTTGACATCGCTTGTTTCTTTATTGGGATGGACCGAAATGATGTTATACATATATTAAATGGCTGTGAACTTTATGCGGAAATTGGAATAAATGTCCTTCTTGAGCGCTGCCTTGTGACTGTTGATGATAGGAACCGACTTGGAATGCATGATTTGTTACGAAATATGGGTAGAGAAATCATACGCGAAGAATCACCAAAGGAGCCCGAGGGGCGTAGCAGGTTGTGGTTTAGTAACGACACGCTTAATGTTTTATTTGAACAAACGGGAACAAAAGTTGTCGAGGGACTGACTTTGATGTTGCCAAGAGATAGTGTAAAATGTTTTAGTACTAATGCATTTCAAAAGATGACGAGACTCAGATTGCTTCAACTTGCTGGAGTACAACTTGATGGAGATTTTGAATACCTTTCGAGAAATCTAAGATGGCTTTCTTGGAATGGGTTTCCTTTAACATGCATACCCTCGAGCTTTTATCAAGGAAATTTAGTTTCAATTGAGTTAGAAAATAGCAATATCAAATATTTATGGAAAGAAACCCAGAGGCTAGAGAAGCTGAAAATTCTCAAGCTTAGTCATTCTCATTATCTGAGACAAAGCCCAAACTTTTCAAACTTGCCTAATCTTGAACAACTAATACTCTCCGATTGTCCAATGTTGTCTGAGATTTCTCCTAGCATTGGACATCTCGATAAAATTCTTCTAATAAATTTAGAAGATTGTATTAGCCTATGCAGCCTCCCAAAAAGTATCTATAAGTTGAAATCTCTGAAAACTCTCATTCTTTCTGGTTGTTTAAAGATTGAAAAGTTGGAAGAGGACTTGGAACAAATGGAATCTTTAACCACCTTGATTGCAAATAACACTGCAATTACAAAAGTGCCGTTTTCAATTGTAAGATCAAAAAGCATTGTATATATTTCTTTGTGCGGCTATGAAGGATTTTCACGTGATGTGTTTCCATCCATCATTCGGTCTTGGATGTCACCAACAAATAATCTCCCATCCCAATTTCAAAGTTCTACTATCATGTCATTTCCTGTTCTTTTAGATGTACGACATAGTAATTCCCACGAATTATCATTGATTTCAAAGCACCTTCCAAGTCTTCAAAGTATTTGGGTGCAGTCCAGCTCAGAACTTCAACTTTCTCACGATGCAGCAATAATTTTGGAGGCATTGTATGCCACTAATTATAATGAATTGGAATCAGCTGCAACTAAATCACAAAATTCCTTGAAATCTATTTTCATTCAATTGGGAATGAATTGCCAAGTTGCCAATATTTTGAAAGAGAAAATTGTACAGAATATGGCTGTCCAAGGGTGCGGGGGCTTTTTGCTCCCGGGTGATAAGTATCCATGTTGGTTAACCTTCAATTGCAAAGGTTCTTCTGTATTTTTTGAAGTCCCTCAAATGGAAGGACGTCATTTAAAGACAATAATATGCGTTGTCTATTCTTCAAATCCAGAAAACATAGCATCAAATGGCCTTAAAAACGTGATGGTGAAAAATTACTCAAAGGCCACCATTCAGCTCTATAAGAGAGAGGCACTAGTCTCATTCGAAGATGAGGAGGGTCAGAGATTAGTATCAAGTATAGAACCTGGCAATAAAATGGAGGTTGTTGTTGTTTTTGAGAACAATTTAATTGTGAAAAAGACAACAATTTATCTCGTATATGATGAACCACTTGGCAGAATAATGGAACAAAGTTATGTGTAG 3201 0.3752 MEDPSHHTENLDERAEAFIHEFQKAMIHEESRSTMREHEVFLSFRGEDTRSSFTSHLHASLQNEGIKAFRDDDSLKRGDHISASIHQAIQKSQISVIVFSRTYADSRWCLDELVKIMECRRTIGQVVLPVFYDVDPSEVRHQSGEFGKAFGSLLTRLSNKKGIYDRFGKAVRYVLKSFSMYDEESPNQELRWSWSAALREAAGLAGFVVLNSRNENEAIKDIVEKVTQLLDKTDLFVANNPVGVETRVKDMIQLLDIQQLNDVHLIGMWGMGGIGKTTIAKAIYNKIGRNFEARSFLANTREVWEKNDGPVSLQQQLLFDICKESKTKIQNIEAGKIILTDRLCGKRVFLVLDDVSTLDQLNALCGSRQWFGSGSRIIITTRDMHILRANRVDQIYTMKEMDESESIELFSWNAFKQASPREDFAGISQNVVEYSGQLPLALEVLGSYLCDRGITEWKCVLDKLKRIPNDQVQKKLKISYDGLNDDFEKEIFLDIACFFIGMDRNDVIHILNGCELYAEIGINVLLERCLVTVDDRNRLGMHDLLRNMGREIIREESPKEPEGRSRLWFSNDTLNVLFEQTGTKVVEGLTLMLPRDSVKCFSTNAFQKMTRLRLLQLAGVQLDGDFEYLSRNLRWLSWNGFPLTCIPSSFYQGNLVSIELENSNIKYLWKETQRLEKLKILKLSHSHYLRQSPNFSNLPNLEQLILSDCPMLSEISPSIGHLDKILLINLEDCISLCSLPKSIYKLKSLKTLILSGCLKIEKLEEDLEQMESLTTLIANNTAITKVPFSIVRSKSIVYISLCGYEGFSRDVFPSIIRSWMSPTNNLPSQFQSSTIMSFPVLLDVRHSNSHELSLISKHLPSLQSIWVQSSSELQLSHDAAIILEALYATNYNELESAATKSQNSLKSIFIQLGMNCQVANILKEKIVQNMAVQGCGGFLLPGDKYPCWLTFNCKGSSVFFEVPQMEGRHLKTIICVVYSSNPENIASNGLKNVMVKNYSKATIQLYKREALVSFEDEEGQRLVSSIEPGNKMEVVVVFENNLIVKKTTIYLVYDEPLGRIMEQSYV 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi304g00053 1066 SUPERFAMILY "Winged helix" DNA-binding domain 471 577 IPR036390 -
Vivi304g00053 1066 Gene3D - 400 484 IPR042197 -
Vivi304g00053 1066 Pfam NB-ARC domain 245 480 IPR002182 GO:0043531
Vivi304g00053 1066 ProSiteProfiles TIR domain profile. 36 230 IPR000157 GO:0007165
Vivi304g00053 1066 Pfam TIR domain 38 161 IPR000157 GO:0007165
Vivi304g00053 1066 SUPERFAMILY Toll/Interleukin receptor TIR domain 29 176 IPR035897 -
Vivi304g00053 1066 Gene3D - 32 236 IPR035897 -
Vivi304g00053 1066 Coils Coil 760 780 - -
Vivi304g00053 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 495 IPR027417 -
Vivi304g00053 1066 SUPERFAMILY L domain-like 591 907 - -
Vivi304g00053 1066 Gene3D - 237 395 IPR027417 -
Vivi304g00053 1066 PRINTS Disease resistance protein signature 744 760 - -
Vivi304g00053 1066 PRINTS Disease resistance protein signature 342 356 - -
Vivi304g00053 1066 PRINTS Disease resistance protein signature 265 280 - -
Vivi304g00053 1066 PRINTS Disease resistance protein signature 435 449 - -
Vivi304g00053 1066 SMART till_3 37 177 IPR000157 GO:0007165
Vivi304g00053 1066 Gene3D Ribonuclease Inhibitor 562 933 IPR032675 -
Vivi304g00053 1066 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 38 892 IPR044974 GO:0006952
Vivi304g00053 1066 FunFam Disease resistance protein (TIR-NBS-LRR class) 34 232 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi304g00053 33 790 WRKY Transcription Factor Family AT4G12020 31.451 6.12e-88 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi304g00053 - - cam:101494533 1669.44