Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi304g00050 ATGTCTTCTTCCAGTTCCAGTTACAGTTTCTCACGTTTTGATGATGTTGATACAAGAAATAGAAGAACACAAACCGACACAAGGATCCATGAAGTCTTCCTAAGCTTCAGAGGGGAAGACACTCGTGCTTCTTTCACTTCACATCTCTACGCTTTGCTTCAAAATGAAGGAATTCGCGTTTTTAGAGACGATGATTCACTTCGAAGGGGAGATCAAATTTCAACTTCACTACGCCGAGCAATCCAAGAGTCTCAAATTTCTGTTATAGTTTTTTCAACAAACTACGCCGAATCGTTTTGGTGTATGGAAGAGTTGGTGTTAATTATGCAGTGTTACAGAACCGTGAAGCAAATTGTTCTGCCAGTGTTCTATGATGTAGATCCATCTGAAGTACGTCATCAAACTGGTAAGTTCGGAAAGGGCCTTCAAAAACTTTTGAAAAAGTTTTCAAACGAGGGGTTCGATTCGGGATTGATGTTAGAAGATTGTGGAAACCCGCTTAACGATCGTCACACCAGAAGCTGGAGTACAGAGCTTCGTGAGGCTGCTTCCCTTGCTGGATTCGTAGTCCCAAATTCCGGGAATGAAAGTGAGGCTATCAAGAATATTGTTGAACATGTTACACGATTGCTAGATAAGACACACTTGTTTATTGCTAATAATCCAGTGGGAGTTGAATCTCGAGTGCAAGATATGATTCAACTGATATACCGAGACCAGGATATCAAACAATCAAATGATGTTCTCCTAATAGGGATGTGGGGTATGGGAGGAGTTGGTAAAACAACCATTGCAAAAGCCATTTACAATGAAATTGGCCACAATTTTGAAGGTAGAAGCTTCCTTGCAAATATTAGGGAAGTTTGGGAGCATAATGTTGGACAAGTGGGTTTACAAGAACAACTTCTTTTTGATATTTGCAAAAATATGACAACTAAAATACAAAGCACTGAATATGGAAAAATCATTATAAAGAATAGACTCTGCCATAAAAGAGTATTGATTGTACTTGATGATGTGAATACATTGGCCCAACTTAATGCTTTATGTGGAAGTCGCAATTGGTTTGGATCGGGTAGTAGAATAATCATCACAACAAGAGATAGACATATACTTCGGGGAAATAGAGTTGACCAAATATACAAAATGAAGCACATGGATGAAAGTGAATCAATTGAGCTATTTAGTTGGAATGCATTCAAGCAGGCAAGTCCTGCAGAAGATTTTGTTGGAATTTCTAGAAATGTAGTGGAGTATTCTGGGGGACTGCCGTTGGCTTTGGAAGTCCTTGGGTCGTATTTGTTTGACAGGGAATTAAGAGAGTGGCTTTGTGTGTTGGAGAAACTCAAAAGAATTCCTAACGACCAAGTACAAAAGAAGCTAAAAATAAGCTATGACGGCTTAAATGATGACACCGAGAAAGAAATGTTCCTTGACATAGCTTGTTTCTTTATTGGAATGGACCGAAATGATGTTACTCTTACATTAAATGGCTGTGGACTTTTTGCAGAAATTGGAATCAGTATCCTTGTTGAGCGAAGCCTTGTAATTGTTGATCATAAAAATAGACTTAGAATGCATGATTTAGTGCGAGATATGGGCAGAGAAATCATTCGTGAGAAATCACCTGAGGAACCTGAGTTGCGTTGCAGGTTGTGGTTTCAAGAGGATGTGATTGATGTACTATCAAATCAATCTGGAACAAAGTCTATTAAAGGGTTGGCTTTGACGTTGCCAAGAGCTAAGGCAAAATGTTTTAGAACTAAAGCATTTAAGAAGATGACGAGACTAAGATTGCTTCAACTTTGTGGGGTAAAACTTGATGGAGATTTCGAATACCTTTCAAAAAATCTGAGATGGCTGTCTTGGAATGGATTTCCTTTAAAACATATTCCTAAAAACGTTTGTCGAGAAAATTTGGTTTCCATCGAGTTAGAGAACAGCAATGTCCAACTTGTGTGGAAAGATATTCAGATGATGGGAAATTTGAAAATTCTCAATCTCAGTCATTCTCATTGTCTGACACACACCCCAAACTTTTCATACATGCCTAATCTTGAAAAGCTAGTACTGAAAAATTGTTCGAGGCTGTCTGAGGTTTCTCCTAGCATTGAACATCTCAATAAAATTCTTCTGATAAATTTAGAAAACTGCATTAGCCTATGTAGCCTCCCAAGAAGCATCTATAGGTTGAAATCTTTAAAAACTCTCGTTCTTTCGGGTTGTTTAAAGATTGACAAGTTGGAAGAGGATTTGGTACAGTTGGAATCTTTAACTACTCTGCTTGCAGATAACACTGCAATAACAAGAGTTCCTTTTTCAGTAGTACGGTCAAAAAGCATTGGATATGTTTCTCTGTGCGGCTACGAAGGATTTTCACGTGATGTGTTTCCATCCATCATTTGGTCTTGGATGTCACCATCAAATAATCTTCCATCCCAATTTCAAACATCTTCTCTCATGTCATCTCTTGTTGCTTTAGATGTACCAAGTAGTAGTTCCCATGAACTATCAGTTTTTTCTAACTACCTTCCGAGGCTTCGAAGTCTTTGGGTGGATTGCAAATCTGAAGCTCAACTTTCTCTAAATGCAAAAATAATTGTGGATACTTTAAATGCCACCCTTTCTAAGGAATTGGAATCAAGTGCAACTACATCACAAATATCAAATATTTCCACATCTACATTAATTCAATGCAGCAGTCAAGTGAATGTTTCAAGATCAAACCATTCCTTTAAGTCTCTTTTAATTCAAATGGGAATGAATTGCCAAGTCACTAATATTCTGAAAGAGATGATTTTACAGAATATGAATGCCAATGGGAGTGGCGGTTGTTTTCTCCCCGGTGATAGTTATCCAAATTGGTCAGCCTTTAATTCCGAAGGTTCTTCTGTAACTTTTCAACTCCCTCAAATGGCAGGGCGTAACTTAAAAACAATGATGTGCATTGTATATACTTCAACTCCAAATGTTATAACATCAGATGGCCTTAAAAACGTGTTAGTGAAAAACTACACAAAGACTACCATTCAGCTTTATAAAAGAGAGGCATTATTCTCCTTTGAAAATGAGGAAGGGCAGAGGGTAGTATCAAGTATGGAACCCGGAGACAAAGTGGAGGTCATCGTTGTTTTTGAGAATGATTTGATTGTGAAGAAGACATCAGTTTATCTCGTATATGATGAACCAATTGATGAAAAGTTGGAGCTATATCATGTACCAGATTTGAGTGGCATTGCTTGTAGAGGCGGTGAAAATGAACTCTCTGTCAAGAGATTCTCTATTGAAGAAGAGTCCACCGATGACTTCAATCAGAACAGAAAGAAGAAAAATCGAGTGGAATAA 3345 0.3794 MSSSSSSYSFSRFDDVDTRNRRTQTDTRIHEVFLSFRGEDTRASFTSHLYALLQNEGIRVFRDDDSLRRGDQISTSLRRAIQESQISVIVFSTNYAESFWCMEELVLIMQCYRTVKQIVLPVFYDVDPSEVRHQTGKFGKGLQKLLKKFSNEGFDSGLMLEDCGNPLNDRHTRSWSTELREAASLAGFVVPNSGNESEAIKNIVEHVTRLLDKTHLFIANNPVGVESRVQDMIQLIYRDQDIKQSNDVLLIGMWGMGGVGKTTIAKAIYNEIGHNFEGRSFLANIREVWEHNVGQVGLQEQLLFDICKNMTTKIQSTEYGKIIIKNRLCHKRVLIVLDDVNTLAQLNALCGSRNWFGSGSRIIITTRDRHILRGNRVDQIYKMKHMDESESIELFSWNAFKQASPAEDFVGISRNVVEYSGGLPLALEVLGSYLFDRELREWLCVLEKLKRIPNDQVQKKLKISYDGLNDDTEKEMFLDIACFFIGMDRNDVTLTLNGCGLFAEIGISILVERSLVIVDHKNRLRMHDLVRDMGREIIREKSPEEPELRCRLWFQEDVIDVLSNQSGTKSIKGLALTLPRAKAKCFRTKAFKKMTRLRLLQLCGVKLDGDFEYLSKNLRWLSWNGFPLKHIPKNVCRENLVSIELENSNVQLVWKDIQMMGNLKILNLSHSHCLTHTPNFSYMPNLEKLVLKNCSRLSEVSPSIEHLNKILLINLENCISLCSLPRSIYRLKSLKTLVLSGCLKIDKLEEDLVQLESLTTLLADNTAITRVPFSVVRSKSIGYVSLCGYEGFSRDVFPSIIWSWMSPSNNLPSQFQTSSLMSSLVALDVPSSSSHELSVFSNYLPRLRSLWVDCKSEAQLSLNAKIIVDTLNATLSKELESSATTSQISNISTSTLIQCSSQVNVSRSNHSFKSLLIQMGMNCQVTNILKEMILQNMNANGSGGCFLPGDSYPNWSAFNSEGSSVTFQLPQMAGRNLKTMMCIVYTSTPNVITSDGLKNVLVKNYTKTTIQLYKREALFSFENEEGQRVVSSMEPGDKVEVIVVFENDLIVKKTSVYLVYDEPIDEKLELYHVPDLSGIACRGGENELSVKRFSIEEESTDDFNQNRKKKNRVE 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi304g00050 1114 Gene3D - 385 469 IPR042197 -
Vivi304g00050 1114 Pfam NB-ARC domain 243 465 IPR002182 GO:0043531
Vivi304g00050 1114 Pfam TIR domain 30 153 IPR000157 GO:0007165
Vivi304g00050 1114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 480 IPR027417 -
Vivi304g00050 1114 Coils Coil 745 765 - -
Vivi304g00050 1114 ProSiteProfiles TIR domain profile. 28 211 IPR000157 GO:0007165
Vivi304g00050 1114 SUPERFAMILY Toll/Interleukin receptor TIR domain 22 145 IPR035897 -
Vivi304g00050 1114 SUPERFAMILY L domain-like 576 861 - -
Vivi304g00050 1114 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 30 759 IPR044974 GO:0006952
Vivi304g00050 1114 SMART till_3 29 185 IPR000157 GO:0007165
Vivi304g00050 1114 Gene3D Ribonuclease Inhibitor 568 941 IPR032675 -
Vivi304g00050 1114 Gene3D - 28 208 IPR035897 -
Vivi304g00050 1114 Gene3D - 209 380 IPR027417 -
Vivi304g00050 1114 PRINTS Disease resistance protein signature 250 265 - -
Vivi304g00050 1114 PRINTS Disease resistance protein signature 420 434 - -
Vivi304g00050 1114 PRINTS Disease resistance protein signature 327 341 - -
Vivi304g00050 1114 PRINTS Disease resistance protein signature 729 745 - -
Vivi304g00050 1114 FunFam Disease resistance protein (TIR-NBS-LRR class) 26 213 - -
Vivi304g00050 1114 SUPERFAMILY "Winged helix" DNA-binding domain 456 562 IPR036390 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi304g00050 25 775 WRKY Transcription Factor Family AT4G12020 29.183 6.80e-82 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi304g00050 - - tpra:123910008 1574.68