Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi304g00039 ATGTCTTCCTCAAAGATCCGATCAATTGTGCCACTTCGACCCAAAAACGGACAGATTAGAAGAAAAGTTTTAAACGACATAGCGAGTTATAAAAAGAAAAACAAAAAATTCGACATATTGAAGGAATTAAAAGTGCATAAAGATAAAGCATTGTTAAGAAGTATTCTAAAAGAAGACGATCGTTATCCTCGTATTGTACGTTTGAAAGCTTCTCTTCAATTGTTCAGTGAAACGGAAACGTTCTTCAAAAGTTTGAGAGAAGAAAACACAGATGCATCTTTCACTTCACATCTCCATGATTGTATTCAATACCTTAGATCTCTCATTTCAGAAATCACCTCTTCTCTTGAAGTGGACGTCAATAGCGAAATCATTTTACAGGAAATACTCTCAAGTTTCAAAAGAAATTCTGCTTCACGTCCCGCAAAACGTCTCCGTGGTTCTCTTAAAAAACTTGAATATCTGATTTCACGGTTTGACTTTAATAGAGATATCCTTGAACTTGAAGTGTTGTTAAGAGGAGAAGTCACACGTGGATCTTTCACTTCACTTCTCCATGATTGCATTAGAGGCTATGAAGATCTCATTTCAGAACTCAGTACTTCTTTTCAAGAGGACGGGTTTGACGTTAATAGAGTCATCCACGAACATGAAGTGTTCTTAAGTTTCCGAGGAGATGACACACGTGCATCTTTCACTTCACATCTTCATGCTTCTCTTCAAAACGATGGAATCTCTGTTTTCATGGACGAGAATTCGCTTCAAAGAGGAAATCACATTTCATCATCACTACTGCGAGCAATTGAAGACACTAAGATCTCTGTGATTGTTTTCTCAAGAAATTATGCTGATTCGAGATGGTGTTTGGAAGAATTGGTGAAAATAATGAGGTGTCGCAGAACTGTAGGGCAGGTGGTGCTTCCAGTTTTCCATGGTGTAGATCCATCTGAGGTTCGTCACCAAACTGGTGAGTTTGGAGAAACATTTCAAAGTCTTTTGGATAGAATTTCAAAGGGCAAGAAAAAAAAGTCTCTTAAATGGAGAGAAGCACTTCGTCAAGCTGCTGGCCTTGCTGGTTTCGTAGTTCCAAATTCAAGGAATGAAAGGGAGGCTATCAATCATATTCTTGAAAAAGTTACTCTTTTGCTTGACAAGACACAACTGTTTGTTGCTGATAATCCAGTGGGAGTTGAATCACGAGTGCGAGATATAATTCAACAGCTAGATATCCAACAATCAAATAAAGTTCTACTCCTGGGGATGTGGGGTATGGGAGGAACCGGTAAAACTACCATTGCAAAAGCCATTTACAACAAAATTGGCCGCAATTTTGAAGGTAGGAGTTTCCTGGCAAATATTAGGGAAACTTGGGAAGGAACTACTGGTAAAGTGTCTTTACAAGAACAACTTCTGTTAGATATCTTCAAAGAAACAAAAACCAAGATACAAAACATTGAGTCTGGAAAAACTACATTGAAGAATAGGCTCTGTCATAAAAGAGTACTTCTCATACTTGATGATGTGAATAGTTTGGACCAACTAAAAGCTTTGTGTGGAAATCGTGAATGGTTTGGTTCTGGGAGTAGAATAATTATCACAACCAGAGATAAACATATACTTAGAGGGCTACGAGTTGACAAAGTATACGCAATGAAAGAAATGGATGAAAATGAATCAATTGAGCTTTTTAGTTTGAATGCATTCAAGCAACCTAGTCCTAGAAAACAATTTGCTGAAATTTCTAGAAATATTGTTGAGTACTGTGGAGGATTGCCACTAGCTCTGGAAGTCATTGGTTCTTATTTGTTTGACAGACCACTCACAGATTGGAAGTGTGTATTGGAGAAAATCAAACTAATTCCCAATGATCAAGTACAACAGAAGTTAAAAATTAGCTATGATGGTTTAAATGATGACCTTGAGAAAGAAATATTTCTTGACATAGCTTGTTTCTTTATTGGGATGGACCGAAATGATGTTATACAGATATTAAATCCTTGTGGACTTTTTGCAGAAATCGGAATAAGTGTGCTTGTTGAGCGAAGCCTGGTAACTGTTGATGATAAAAACAAGCTTGGAATGCATGATTTGTTACGAGATATGGGAAGAGAAATCATACGTGAAAAATCACCCAAGGAGCCCGAGGAGCGTAGCAGATTATGGTTTCGTGAAGATGTGCTTGGTGTTTTATTTGATCGAAATGGAACAAAAGCTGTTGAGGGACTAGCTTTGAAGTTGCCAATAGCTAATTCAAAATGTTTTAGCACTAAAGCGTTTAAGAAGATGAAGAGACTGAGATTGCTTCAACTTGTTTGTGTACAACTTGATGGAGATTTTGAATATCTTTCAAGAAATTTAAGATGGCTATGTTGGAACGGATTTCCTTTAACATGCATACCTTCAAATTTTTATCAAGGAAACTTAGTTTCCATGGAGTTAGAAAACAGCAATATGAAATTTATGTGGAAAGAGACCCCGAGAATGGAGATGCTGAAAATCCTAAACCTTAGTCATTCCCATCAACTGATGCAGACCCCAAACTTCTCAAATTTGCCTAATCTTGAAAAGCTAATACTTGTAGATTGTCGAATGTTATCTGAGGTTTCCAACAGCATTGGAGATCTCAATAAAATTCTTCTAATAAATATGGAAGACTGTACTAGCCTATGTAACCTTCCAAGAAGCATTTATAAATTGACATCTCTTAAAACTCTAATTCTTTCAGGGTGTTTAATGATTGACACGTTGGAAGAAGACATAGAACAAATGGAATCTTTGACCACTTTGATTGCAAATAACACTGGAATAACAAGAGTTCCGTTTTCTATAGTGAGATCAAAAAGTATCGGCTACATTTCTTTGTGCGGCTATGAGGGTTTCTCACGGGATGTATTTCCAGCTATCCTTTCGTCTTGGATGTCTCCAACAAATAATTTTACACCCCAATTTCAAACATCTACTATTATGTCTTCTCTTATTTCTTTAGATGTACCACATAGTAGTTCCCAGGAGCTATCATCGATTTCCAAGTACCTTCCAAGTCTTAGAAGTCTTTGGGTGGAGTGTAGCTCGGAAGATCAACTTTCTCATGATACAACAATAATTTTAGAGGCATTATATGCCCTAAATTCTCGAGAATTGGAACCAACATCAACCACATCACAAGTATCAAAAAATTCCTTGAAATCTCTTTTCATTCAACTGGGAAGGAATTGCCAAGTTGCCAATATTCTGAAAGAGAAAGTTTTACAGTATATGACCGGTGACGAGAGTGGTGGTTGTGTGCTCCTGGGTGATAGTTATCCCGATTGGTTAAGCTTCAATTGTGATGGTTCTGCTGTAATTTTTAAAGTCCCTCAAGTAGAAGGGCGTAACTTGAAGTCATTGATCTGCATTGCCTATTCATCAACTCCGGATGACATAACATCGGATGGTCTTAAAAATGTGTTGGTGAAAAATTACACGAAAGCCACCATTCAGCTCTATAAGAAAGAGACACTTGCTTCCTTTACGGACGAGGAGGGGGAGAGAGTAGTATCAAGTATAGAACCCAGAGACAAAGTGGAAGTTGTTGTTGTTTTTGAAAATGGTTTCAGTGTGAAGAAAACTACAGTTTATCTCGTATATGATGAACCAATGGGAGAAAAAAGTGAACAATGGGAAGCACCAGAAGGAAATACTATTGCTTGTAGTGCCGATGAAAATGAAAGCGTACAATGTGAAGAACCAGACGAAAATGCTAATGCTTATAGTGCTGATGAAAATGAAAGCATATTAAGGACGAGCTCTCCACAAGTGGAACTCGTGGAAAAAAATGTTGGTGCGAGTAGTTGTGGATCTGTCAAATATAGTTTTAGACAGTGGATTACAAATTTTATGTGTAGATTAGTGGAGTGCTGGGGATAG 3906 0.374 MSSSKIRSIVPLRPKNGQIRRKVLNDIASYKKKNKKFDILKELKVHKDKALLRSILKEDDRYPRIVRLKASLQLFSETETFFKSLREENTDASFTSHLHDCIQYLRSLISEITSSLEVDVNSEIILQEILSSFKRNSASRPAKRLRGSLKKLEYLISRFDFNRDILELEVLLRGEVTRGSFTSLLHDCIRGYEDLISELSTSFQEDGFDVNRVIHEHEVFLSFRGDDTRASFTSHLHASLQNDGISVFMDENSLQRGNHISSSLLRAIEDTKISVIVFSRNYADSRWCLEELVKIMRCRRTVGQVVLPVFHGVDPSEVRHQTGEFGETFQSLLDRISKGKKKKSLKWREALRQAAGLAGFVVPNSRNEREAINHILEKVTLLLDKTQLFVADNPVGVESRVRDIIQQLDIQQSNKVLLLGMWGMGGTGKTTIAKAIYNKIGRNFEGRSFLANIRETWEGTTGKVSLQEQLLLDIFKETKTKIQNIESGKTTLKNRLCHKRVLLILDDVNSLDQLKALCGNREWFGSGSRIIITTRDKHILRGLRVDKVYAMKEMDENESIELFSLNAFKQPSPRKQFAEISRNIVEYCGGLPLALEVIGSYLFDRPLTDWKCVLEKIKLIPNDQVQQKLKISYDGLNDDLEKEIFLDIACFFIGMDRNDVIQILNPCGLFAEIGISVLVERSLVTVDDKNKLGMHDLLRDMGREIIREKSPKEPEERSRLWFREDVLGVLFDRNGTKAVEGLALKLPIANSKCFSTKAFKKMKRLRLLQLVCVQLDGDFEYLSRNLRWLCWNGFPLTCIPSNFYQGNLVSMELENSNMKFMWKETPRMEMLKILNLSHSHQLMQTPNFSNLPNLEKLILVDCRMLSEVSNSIGDLNKILLINMEDCTSLCNLPRSIYKLTSLKTLILSGCLMIDTLEEDIEQMESLTTLIANNTGITRVPFSIVRSKSIGYISLCGYEGFSRDVFPAILSSWMSPTNNFTPQFQTSTIMSSLISLDVPHSSSQELSSISKYLPSLRSLWVECSSEDQLSHDTTIILEALYALNSRELEPTSTTSQVSKNSLKSLFIQLGRNCQVANILKEKVLQYMTGDESGGCVLLGDSYPDWLSFNCDGSAVIFKVPQVEGRNLKSLICIAYSSTPDDITSDGLKNVLVKNYTKATIQLYKKETLASFTDEEGERVVSSIEPRDKVEVVVVFENGFSVKKTTVYLVYDEPMGEKSEQWEAPEGNTIACSADENESVQCEEPDENANAYSADENESILRTSSPQVELVEKNVGASSCGSVKYSFRQWITNFMCRLVECWG 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi304g00039 1301 Gene3D - 389 549 IPR027417 -
Vivi304g00039 1301 SUPERFAMILY L domain-like 744 1075 - -
Vivi304g00039 1301 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 381 648 IPR027417 -
Vivi304g00039 1301 Pfam TIR domain 217 379 IPR000157 GO:0007165
Vivi304g00039 1301 SUPERFAMILY "Winged helix" DNA-binding domain 624 730 IPR036390 -
Vivi304g00039 1301 Pfam NB-ARC domain 398 619 IPR002182 GO:0043531
Vivi304g00039 1301 Gene3D Ribonuclease Inhibitor 743 1090 IPR032675 -
Vivi304g00039 1301 PRINTS Disease resistance protein signature 495 509 - -
Vivi304g00039 1301 PRINTS Disease resistance protein signature 588 602 - -
Vivi304g00039 1301 PRINTS Disease resistance protein signature 418 433 - -
Vivi304g00039 1301 PRINTS Disease resistance protein signature 897 913 - -
Vivi304g00039 1301 Gene3D - 213 388 IPR035897 -
Vivi304g00039 1301 SMART AAA_5 415 555 IPR003593 GO:0016887
Vivi304g00039 1301 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 217 1045 IPR044974 GO:0006952
Vivi304g00039 1301 FunFam Disease resistance protein (TIR-NBS-LRR class) 214 385 - -
Vivi304g00039 1301 Gene3D - 553 644 IPR042197 -
Vivi304g00039 1301 SUPERFAMILY Toll/Interleukin receptor TIR domain 216 360 IPR035897 -
Vivi304g00039 1301 ProSiteProfiles TIR domain profile. 215 383 IPR000157 GO:0007165
Vivi304g00039 1301 SMART till_3 216 357 IPR000157 GO:0007165
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi304g00039 216 1018 WRKY Transcription Factor Family AT4G12020 29.787 1.37e-82 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi304g00039 - - tpra:123910008 1628.22