Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi304g00037 ATGTCTTCTTCAAAGCTCAGATCTACCCGGCCACTTCGACGCGAACAGATTAAAACACAAATGGTAAAAAGCATGATGGATTCTATACAAAGAAACACAAAAGGAAGTGATATAAGAAGCTATGAAGTGTTCTTAAGTTTTCGAGGAGAAGATACCCGTGCATCTTTTACTTCACATCTCTATGCTGCACTTCAAAATGACGGAATCACCGTTTTCATGGACGATGATTCGCTTCAGAGAGGAGATCATATTTCAAACTCACTGCTGCAAGCAATTGAAGAGTCTCGGATCTCTGTGATAGTTTTTTCAAAAAATTATGCAGATTCGCGGTGGTGTTTAGATGAGTTGGTGAAAATAATGGAGTGTCGTAGAACCATAGGTCAGGTGGTGCTTCCGGTGTTCTATGGCGTAGATCCATCTGAAGTTCGTCACCAAACTGGTGAGTTTGGAGAAGCATTTCATAGTCTGTTAAACAGAAGAAAGAATCAGGAAGACTCTGTATCGCGGAAATGGAGAGATGCACTTCGTGAAGCTGCTGGCCTTGCTGGCTTCGTTGTTCTAAATTCGAGGAATGAAAGGGAGGCTATCAATCATATTGTTGAAAAAGTTACTCTTTTGCTTGATAAGACAGACTTGTTTGTTGCTGATAATCCAGTGGGAGTTGAATCACGAGTGCAAGATACGACTCAACAGTTAGACATCAAACAATCAAATAATGTTCTACTCTTAGGGATGTGGGGTATGGGGGGAACCGGTAAAACAACCATTGCAAAAGCCATTTACAACAAAATTGGCCGCAATTTCGAAGGAAGGAGCTTCCTTGCAAATATTAGGGAAACTTGGGAGCAAACTACTGAAAAAGTGTCTTTACAAGAACAACTTCTTTCAGATATCTTCAAAGAAACAACAACCAAGATACAAAACATTGAGTCTGGGAAACTTACATTGAAGGATAGGCTCTGTCATAAAAGAGTACTTCTCGTACTTGATGATGTGAATAGTTTGGACCAACTAAAAGCTTTGTGTGGAAGTCGTGAATGGTTTGGTCCAGGAAGTAGAATAATAATCACAACCAGAGATAAACATATACTTAGAGGGCTGAGAGTTGACAAAGTATGTGCAATGAAAGTAATGGATAAAAATGAATCAATTGAACTTTTTAGTTTGAATGCATTCAAGCAACCGAGTCCTAAAAAACAATTTGCTGAAATTTCTAGAAAAATTGTTGAGTACTGTGGGGGATTGCCACTAGCTTTGGAAGTCCTTGGCTCTTATTTGTTTGAAAGGGGAGTAAGAGATTGGAAGTGTGTATTAGAGAAAATCAAAATAATTCCCAATGACCAAGTACAACGGAAGTTAAAAATAAGCTATGATGGTTTAAATGACGATACTGAGAAAGAAATATTTCTTGACATAGCTTGTTTCTTTATCGGGATGGACCGAAATGATGTTATACAAATATTAAATGCTTGTGGACTTTTTGCAGAAATTGGAATAAGTGTGCTTGTTGAGCGAAGCCTGGTAACTGTTGACGATAAGAACAAGCTTGGAATGCATGATTTGTTACGAGATATGGGAAGAGAAATCATTCGAGAAAAATCACCAAAAGAGCCTGAGGAACGTAGCAGGTTATGGCTTCATGAGGATGTGCTTGATGTTTTATCGGATCGAAATGGAACAAAAGCTATTGAGGGGCTAGTTTTGAAGTTGCCAATAGCTAGTTCAAAATGTTTTAGCACTAAAGCTTTTAAGAAGATGAAGAGACTCAGATTGCTTCAACTTGCTGGAGTAAAACTTGATGGAGATTTCGAATATCTTTCAAGAAATTTAAGGTGGCTATGTTGGAATGGATTTCCTTTAACATGCATACCTTCAGATTTTTATCAAGGAAATATAGTTTCCATGGAGTTAGAAAACAGTAATATGAGATTTGTGTGGAAAGAGACCCAGAGAATGGAGATGCTGAAAATCCTAAACCTTAGTCATTCTCATCATCTGATGCAGACCCCAGACTTCTCTCATTTACCTAATCTTGAAAAGCTAATACTTGTAGATTGTCCAATGTTATCTGAGGTTTCCAACAGCATTGGAGATCTCAAAAAAATTCTTCTAATAAATTTGGAAGACTGTATTAGCCTATGCAACCTTCCAAGAAGCATTTATAAGTTGACATCTCTTAAAACTCTGATTCTCTCAGGGTGTTTAATGATTGACACGTTGGAAGAAGACATAGAACAAATGGAATCTTTAACCACTCTGATTGCAAATAACACTGGAATAACAAGAGTTCCGTTTTCTGTAGTGAGATCAAAAAGCATTGGCTATATTTCCTTGTGCGGCTATGAAGGATTCTCACGAGATGTGTTTCCATCTATCATTTGGTCTTGGATGTCACCAACAAATACTTTTCCATCCCAATTTCAAACCTCTCATATCATGTCATCTCTTGTTCCTCTTGATGTACCACATAGTAGTTCCCAGGAGCTATCATCGATTTCCAAGTATCTTCCAAATCTTAGAAGTCTTTGGGTGGAGTGCAGCTCGGAAGATCAACTTTCTCATGATACAACAATAATTTTGGAGGCATTATATGCCACAAATTCTAAAGAATTGGAACCAACAGCTACTACATCACAAGTATCACAAATTTCGTTGAAATCTCTTTTCATTCAATTGGGAATGACTTGCCAAATTGCCAATATTTTGAAAGAGAAAATTTTACAGAATACGACTGTTGATGAGAGTGGTGGTTGTGTGCTCCTGGGTGATAGTTATCCCGACTGGTTAAGCTTCAATTGTGATGGTTCTTCTGTAACTTTTGAAGTTCCTCAAGTAGAAGGGCATAACTTGAAGTCATTGATGTGCATTGCCTATTCTTCAACTCCGGATAACATAACATCGGATGGACTTATAAGTGTGTTAGTGAAAAATTACACAAAGGCCACCATTCAGCTCTATAAGAGAGAGACATTAGCTTCCTTTAAGGATGAGGAGGGGGAGAGATTAGTATCAAGTATAGAACCCAGAGACAGAGTGGAAGTTGTTGTTGTTTTTGAGAATGGTTTCAGTGTGAAGAAAACAGCCATTTATCTCATTTATGATTGA 3105 0.3787 MSSSKLRSTRPLRREQIKTQMVKSMMDSIQRNTKGSDIRSYEVFLSFRGEDTRASFTSHLYAALQNDGITVFMDDDSLQRGDHISNSLLQAIEESRISVIVFSKNYADSRWCLDELVKIMECRRTIGQVVLPVFYGVDPSEVRHQTGEFGEAFHSLLNRRKNQEDSVSRKWRDALREAAGLAGFVVLNSRNEREAINHIVEKVTLLLDKTDLFVADNPVGVESRVQDTTQQLDIKQSNNVLLLGMWGMGGTGKTTIAKAIYNKIGRNFEGRSFLANIRETWEQTTEKVSLQEQLLSDIFKETTTKIQNIESGKLTLKDRLCHKRVLLVLDDVNSLDQLKALCGSREWFGPGSRIIITTRDKHILRGLRVDKVCAMKVMDKNESIELFSLNAFKQPSPKKQFAEISRKIVEYCGGLPLALEVLGSYLFERGVRDWKCVLEKIKIIPNDQVQRKLKISYDGLNDDTEKEIFLDIACFFIGMDRNDVIQILNACGLFAEIGISVLVERSLVTVDDKNKLGMHDLLRDMGREIIREKSPKEPEERSRLWLHEDVLDVLSDRNGTKAIEGLVLKLPIASSKCFSTKAFKKMKRLRLLQLAGVKLDGDFEYLSRNLRWLCWNGFPLTCIPSDFYQGNIVSMELENSNMRFVWKETQRMEMLKILNLSHSHHLMQTPDFSHLPNLEKLILVDCPMLSEVSNSIGDLKKILLINLEDCISLCNLPRSIYKLTSLKTLILSGCLMIDTLEEDIEQMESLTTLIANNTGITRVPFSVVRSKSIGYISLCGYEGFSRDVFPSIIWSWMSPTNTFPSQFQTSHIMSSLVPLDVPHSSSQELSSISKYLPNLRSLWVECSSEDQLSHDTTIILEALYATNSKELEPTATTSQVSQISLKSLFIQLGMTCQIANILKEKILQNTTVDESGGCVLLGDSYPDWLSFNCDGSSVTFEVPQVEGHNLKSLMCIAYSSTPDNITSDGLISVLVKNYTKATIQLYKRETLASFKDEEGERLVSSIEPRDRVEVVVVFENGFSVKKTAIYLIYD 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi304g00037 1034 SMART till_3 40 181 IPR000157 GO:0007165
Vivi304g00037 1034 PRINTS Disease resistance protein signature 650 666 - -
Vivi304g00037 1034 PRINTS Disease resistance protein signature 242 257 - -
Vivi304g00037 1034 PRINTS Disease resistance protein signature 319 333 - -
Vivi304g00037 1034 PRINTS Disease resistance protein signature 412 426 - -
Vivi304g00037 1034 Pfam TIR domain 41 203 IPR000157 GO:0007165
Vivi304g00037 1034 Gene3D Ribonuclease Inhibitor 566 898 IPR032675 -
Vivi304g00037 1034 Gene3D - 38 205 IPR035897 -
Vivi304g00037 1034 Gene3D - 206 372 IPR027417 -
Vivi304g00037 1034 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 41 869 IPR044974 GO:0006952
Vivi304g00037 1034 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 472 IPR027417 -
Vivi304g00037 1034 ProSiteProfiles TIR domain profile. 39 207 IPR000157 GO:0007165
Vivi304g00037 1034 SUPERFAMILY "Winged helix" DNA-binding domain 448 554 IPR036390 -
Vivi304g00037 1034 SUPERFAMILY Toll/Interleukin receptor TIR domain 39 184 IPR035897 -
Vivi304g00037 1034 Gene3D - 377 461 IPR042197 -
Vivi304g00037 1034 FunFam Disease resistance protein (TIR-NBS-LRR class) 37 209 - -
Vivi304g00037 1034 SMART AAA_5 239 379 IPR003593 GO:0016887
Vivi304g00037 1034 Pfam NB-ARC domain 222 442 IPR002182 GO:0043531
Vivi304g00037 1034 SUPERFAMILY L domain-like 567 872 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi304g00037 36 767 WRKY Transcription Factor Family AT4G12020 30.574 1.70e-83 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi304g00037 - - tpra:123910008 1605.11