Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi304g00009 ATGGGTTCTGTTTGCTGTTGTTTAAGCTGTGATGATGTAGAAGATTATGTCAATCCAAATAGTCCTGTGTTTAGGAACTGTGTGTGTCTCAGTTGCTTGGTGCAGAATCTTTTGAATGCGTATGCATCAATATTCCGTAGAGGTGAAACACATTCAATTTCTTCCTCTCTTCAAGGAACGGCATCCATGACTTCTGCAGCATCACTTGATAATTCTCTATCTGACATTTACCGTTCTCCTCCAAGGCCATTACCATATGATGCAGAGCCTCGTTTTTTCCGTTCACAACGTGATGGACTTGTTTCAAGGCGTGAGAAAAGTTCAAGTCATTCAAATGAGGAAACAGAACCTCTAAGAAGCGACGTTGATGTGGATCCAGAGCCTCTAAACTCAGCTGACAAATGGAATGAATGTGCTCGTGAAGATGAATCAAAGATATACCGTTCTAAGTCGGCATTAAGACTTTCATCAGCTAAATATACAGCTGGAGTTGGGCTCGTTTACACGTCCTCGGAAGAAGAGGATATCTGTCCAACATGTCTTGAAGAATACACTAAAGAGAATCCAAAGATAATGACAAAATGCTCTCATCATTTTCACCTTGGTTGCATCTATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTTTGTGGAAAGGAAATGGAATTCGATGAGACAACTTATTCTTGA 690 0.4087 MGSVCCCLSCDDVEDYVNPNSPVFRNCVCLSCLVQNLLNAYASIFRRGETHSISSSLQGTASMTSAASLDNSLSDIYRSPPRPLPYDAEPRFFRSQRDGLVSRREKSSSHSNEETEPLRSDVDVDPEPLNSADKWNECAREDESKIYRSKSALRLSSAKYTAGVGLVYTSSEEEDICPTCLEEYTKENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKEMEFDETTYS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi304g00009 229 CDD RING-H2_AIRP1-like 173 221 - -
Vivi304g00009 229 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 54 225 - -
Vivi304g00009 229 MobiDBLite consensus disorder prediction 98 132 - -
Vivi304g00009 229 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
Vivi304g00009 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 226 IPR013083 -
Vivi304g00009 229 SMART ring_2 177 217 IPR001841 -
Vivi304g00009 229 SUPERFAMILY RING/U-box 172 224 - -
Vivi304g00009 229 Pfam RING-H2 zinc finger domain 172 217 IPR024766 GO:0008270
Vivi304g00009 229 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi304g00009 1 226 C3H Transcription Factor Family AT5G15790 57.759 2.26e-89 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi304g00009 - - gmx:100777068 412.149