Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi304g00001 ATGGTTCGTCAATCTAATTTGGTTATCATTGGTGTCTCTGTTGGTTTGGCCCTTGGAATTCTGATTTCTTGCCTCATATTTTTCGGCATAAGGTGGTGCAAGAAGCGTTCTCATATTACACGATCTGCAAACGAGCCTAGTTTAACAACTCTCCCGATACGAACAAATGGAGTTGAAGCAAGTACCGACTTTAGTGCATCAATCACTAGTTCCGTAACCACATCAAGGTCTGAAAATCTACCGAGAAATTCCAATTTCTCTTGGTGGAATCATCAAAACAAAGACCGCTTTGCTTCAGCATCAGGCATTCTAAAGTATTCATACAAAGAACTTCAAAAGGCCACACAAAATTTCACAACTACCTTGGGGGAAGGATCATTTGGCACGGTTTATAAAGCAACAATGCCTACAGGAGAAGTGATAGCTGTGAAGGTGCTAGCACACAATTCCAAACAAGGGGAAAGAGAATTCCAAACAGAGGTGTCTCTGCTAGGAAGACTACATCACCGGAATCTTGTGAATCTGCTTGGGTACTGTGTAGATAAAGGACAGCACATACTGGTTTATCAGTTCATGAGCAATGGAAGTTTAGCAAGTATTTTGTATGGTGAAGAAAAGAAGTTAAGTTGGGATGAAAGGCTGCAAATTGCTCTTGATATTTCACATGGAATAGAGTATCTTCATGAAGGAGCAGTCCCACCGGTCATACATCGTGATTTGAAGTCTCCCAATATATTGCTAGATGACACGATGAGAGCAAAGGTTGCTGATTTTGGTCTCTCTAAGGAAGAGATCTTCGATGGCCGAAATTCCGGTCTTAAAGGTACATATGGTTACATGGACCCGGCGTACATTTCCTCAAACAAGTTAACAACCAAGAGTGACATATACAGTTTTGGCATCATACTTTTTGAGCTCATCACAGCCATCCATCCTCATCAAAATTTGTTGGAATATGTTAACCTTGCTGCAATGGAACATGATGGTATAGATGAGATACTTGACAAGCAACTTGTTGGAAAATGCAATGTTTTAGAAGTGAGGCAACTTGCTAAAACTGCACACAAATGCTTACACAAGTCACCAAAGAAAAGACCCTCCATAAGTGAAGTTTCACAAAGCATATCAAGAATAAAGCAAAGAAGATTGCGTCATGTAATGGAAGATAACTTGTCATTTGCAAATAGTAATAACTTTTCAAGAACATCAAGTCGATTAGATGATCGACAAGTTGAATTAAGTAGGATAGTTACCATGACGATCAAAGAAACTGTATAA 1278 0.3944 MVRQSNLVIIGVSVGLALGILISCLIFFGIRWCKKRSHITRSANEPSLTTLPIRTNGVEASTDFSASITSSVTTSRSENLPRNSNFSWWNHQNKDRFASASGILKYSYKELQKATQNFTTTLGEGSFGTVYKATMPTGEVIAVKVLAHNSKQGEREFQTEVSLLGRLHHRNLVNLLGYCVDKGQHILVYQFMSNGSLASILYGEEKKLSWDERLQIALDISHGIEYLHEGAVPPVIHRDLKSPNILLDDTMRAKVADFGLSKEEIFDGRNSGLKGTYGYMDPAYISSNKLTTKSDIYSFGIILFELITAIHPHQNLLEYVNLAAMEHDGIDEILDKQLVGKCNVLEVRQLAKTAHKCLHKSPKKRPSISEVSQSISRIKQRRLRHVMEDNLSFANSNNFSRTSSRLDDRQVELSRIVTMTIKETV 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi304g00001 425 SUPERFAMILY Protein kinase-like (PK-like) 88 373 IPR011009 -
Vivi304g00001 425 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Vivi304g00001 425 Gene3D Transferase(Phosphotransferase) domain 1 192 400 - -
Vivi304g00001 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Vivi304g00001 425 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 192 402 - -
Vivi304g00001 425 Gene3D Phosphorylase Kinase; domain 1 82 191 - -
Vivi304g00001 425 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 6 390 - -
Vivi304g00001 425 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 90 191 - -
Vivi304g00001 425 CDD STKc_IRAK 122 378 - -
Vivi304g00001 425 Pfam Protein tyrosine and serine/threonine kinase 118 374 IPR001245 GO:0004672|GO:0006468
Vivi304g00001 425 SMART serkin_6 116 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi304g00001 425 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Vivi304g00001 425 ProSiteProfiles Protein kinase domain profile. 116 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi304g00001 86 380 Receptor kinase-like Gene Family AT1G79620 42.258 3.98e-71 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Vivi304g00001 PK_Tyr_Ser-Thr 6.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi304g00001 - - gmx:100819995 724.161