Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi303g00012 ATGGAGCTTCTCCACTCCGACGAAACCGTGTCGGAAGATGCTGATATTCCCGAGGACGACAACACCACAAACGATTCTCCAAACCCCACCGCCGGGATCGAAGACGGCGCGACTCTCGATGTATCAGGGAAGAACTTGGAGTTTCCGGCGCCGGAGAATTCTAAAGACGATGCCGTGGAGAGTTTATACATGTACAAGAATGTTTACAGTTTGATTCCGAAGTCGGTGGGTGGTCTCGTGAGATTGAAGACGCTGAAATTCTTTGGGAATGAGATTAACTTGTTCGCACCGGAGTTTGGTAGTATGACGAGGTTGGAGAGGTTGCAGATGAAGGTAGCTTCTCCTGGAATTGGTGGGTTGCCGTTGCATAAATTGAAGGGTTTGAAAGAGCTTGAGCTTTCCAAAGGTCCTTCTCGACCTTCTGCGTTTCCTATATTGACTGAGATTGCTGCTCTCAAGTGTTTGACCAAACTTTGCATTTGTCACTTCTCTATAAGATACCTTCCTCCGGAAATTGGGTGCTTAAAGAGTTTGGAGTATCTTGATCTTTCATTCAATAAATTGAAGACATTGCCCTCAGAGATTACTTCTTTGGAAGCATTAATAACCATGAAAGTTGCTAATAATAAGTTGGTGGAATTACCGCCGGGTATGACATCACTATCGAGGCTGGAGAATCTGGACCTGTCAAATAATAGGTTGACTTCGTTAGGATCCCTTGAACTTAGCTCGATGAATAGACTTCAGAACTTAAATCTTCAGTACAACAAGCTGCCCAGCATTTTTCAAATTCCTTCATGGATATGCTGTAATATGGAAGGAAATGATGGAGATAGATGCAAAGACAATTATAGCAGTTCTTCTGTTGAAATGGATGTCTATGAAAGCAATTTACAGGAAAATGAGGAAACCTTTTCTCATGCCTGGAAGTCAGGTAAACGGTGGAAGCGGCGACACTATAAACATCAGAAAGCCCGTCAAGAACAGAAAGCTCGTCAAGAGCGGTTGAGTAACAGCAGGAAATGGAAAGGTGTAGATCATGACCAATTGTTAAGCAAGAAGATCCACAGAATTTCTGAACCAGAAAATCTGGATACTCTTGTCTCTGAAAATTGCACAGAAACTATACCTGACAATGGGAGCTTGGATGACAATCATAAAAAAATATTCTCCGAAGAAGCAGCGCATGAAAGTTTAATTGATAATGTTGACAATGATGAGGAAATTATTGAAAAGCAGTTTTCTCAAGAAGATTGCTGCACTGCGGAAGGTAAAGATGAAATAGATGCATCCTCATGCTCCTTAGACAATGGCCGAAGTGAACAGGATGGAGCATCTTGTTCAGTTTTTTCGAAGTGTAGTTTTAAATCAAAGAGGCATTCAGAACGGGATCTTGATAATCCTAAACCCCGCAAGTCTAGAAAACCTATTAGTGATGGCTCATTATTGTCTTCCAAATACAGTAAAATTTCATTTTGTGGCACCGAGGACCATCTATCAGATGGCTTTTATGATGCGGGACGTGATCGGCCGTTTATGCCTCTTGAGAGTTACGAGCAAAATCAGTGTCTTGCTTCTCGTGAAGTCATTCTGTTAGACAGACAAAGGGATGAAGAATTGGATGCCATTATTCTATCAGCTCAGGCATTGGTATCTAATTTAAAGCAGTTAAATGGTTTAAACAAACCTGGGAGCCAGGGTGAAGTTGATAACTTGCAGACAGCATCACTGCTTGCACTCTTTGTATCTGATCATTTTGGTGGAAGTGATAGAGGTGCTATTGTAGAAAAGACACGCAAGTCTGTTTCTGGCTCAAACTATAATAAGCCTTTTGTCTGTACATGCTCGGCAGGAAGCAGAACAAGTATAAATGCTGCAACTGAATCAGTTGCGAATGCCATAGGAAATATTAATCTTTCTAGGATCTCTGAAAAATCTCTTGATTCTATTAAAAAAAGGCGAAACTCAATTATTGTTCCGATTGGCTCTGTTCAGTATGGTGTTTGTAGGCATAGAGCTCTGCTTTTTAAGTATTTATGTGATCACATGGAGCCACCTATACCTTGTGAGCTTGTTAGGGGTTACCTGGATTTTTCACCACATGCTTGGAATATCATTCTAATAAAAAAGGGTGTTACATGGGTTCGAATGCTTGTTGATGCTTGCCGACCTCATGATATTAGAGAAGAGAAAGATCCAGAATATTTCTGCAGGTACATACCTCTTCGTCGAACCCAAATTCCTCTTTCAACTGGCATTCTTCCTAGTCCTGATTATTCCTTTCCATCTCTATCTAATTGTGATGAACTTGAGAAAAAAGCTTTAACTACATTAGTTCGGTGCAAGTATGGATCAGTTGAGGCTGCAGTGAAGGTGCGTACTTTGGAAGTACAGGATAGTTCAGCAGACAAAATAAAAAACTTCGAATATAATTCATTGGGAGAAATCAGAATTCTTGGTGCTTTCAAACACCCCTGTATAGTGGAAATATACGGACACCAAATATCTTGCAAATGGACCATCTCAGCTGATGGTAACCCTGAGCATCGTGTGTTGAGATCTGCAATTTTTATGGAATATGTGGAAGGAGGCTCCTTAAAATCTTATCTAGAAGAGCTGTCAAAAGCTGGTGAAAAGCATGTTCCTGTGGAGTTAGCCTTGCATATTGCCAAAGATGTCTCATGCGCTTTGTCGGAGCTGCATTCAAAGCACATAATTCATCGTGACATAAAAAGCGAAAACATTCTGTTTGATTGTGATAGGAAGAGAGATGATGGAACTCCCACTGTGAAGCTCTGTGATTTTGATAGTGCAGTGCCGCTAAGATCACCTTTACATGCATGCTGTATTGCTCATGTAGGATCACCTCCCCCTTGTGTGTGTGTTGGAACACCTCGATGGATGGCTCCAGAGGTCATGCGGACTATGTATGAAAAAAATACTTATGGATTGGAAGCTGATATTTGGTCATTTGGATGTTTACTGCTGGAGATGCTGACTTTGCAAATTCCTTATTTTGGAGTACCTGATTTACACGTCCATGATAGTCTGCAGATGGGTAAACGGCCACAACTAACTGATGAGCTGGAGGCGTTAAGTTCAACAAATGAACCTACGATGATTCAATCCGGTGAAGAGCTTGAAAAATCAGATGCTGAGACAGACACATTGGAGTTCCTTGTTGATTTGTTTCACAGGTGTGTTGAAGAAAATCCAAATGACCGACCTACTGCCGAAGAAATCCATGAAATGCTGGTTGGACACACAAGGCATACAAGTTCAAAATGTTAG 3291 0.4129 MELLHSDETVSEDADIPEDDNTTNDSPNPTAGIEDGATLDVSGKNLEFPAPENSKDDAVESLYMYKNVYSLIPKSVGGLVRLKTLKFFGNEINLFAPEFGSMTRLERLQMKVASPGIGGLPLHKLKGLKELELSKGPSRPSAFPILTEIAALKCLTKLCICHFSIRYLPPEIGCLKSLEYLDLSFNKLKTLPSEITSLEALITMKVANNKLVELPPGMTSLSRLENLDLSNNRLTSLGSLELSSMNRLQNLNLQYNKLPSIFQIPSWICCNMEGNDGDRCKDNYSSSSVEMDVYESNLQENEETFSHAWKSGKRWKRRHYKHQKARQEQKARQERLSNSRKWKGVDHDQLLSKKIHRISEPENLDTLVSENCTETIPDNGSLDDNHKKIFSEEAAHESLIDNVDNDEEIIEKQFSQEDCCTAEGKDEIDASSCSLDNGRSEQDGASCSVFSKCSFKSKRHSERDLDNPKPRKSRKPISDGSLLSSKYSKISFCGTEDHLSDGFYDAGRDRPFMPLESYEQNQCLASREVILLDRQRDEELDAIILSAQALVSNLKQLNGLNKPGSQGEVDNLQTASLLALFVSDHFGGSDRGAIVEKTRKSVSGSNYNKPFVCTCSAGSRTSINAATESVANAIGNINLSRISEKSLDSIKKRRNSIIVPIGSVQYGVCRHRALLFKYLCDHMEPPIPCELVRGYLDFSPHAWNIILIKKGVTWVRMLVDACRPHDIREEKDPEYFCRYIPLRRTQIPLSTGILPSPDYSFPSLSNCDELEKKALTTLVRCKYGSVEAAVKVRTLEVQDSSADKIKNFEYNSLGEIRILGAFKHPCIVEIYGHQISCKWTISADGNPEHRVLRSAIFMEYVEGGSLKSYLEELSKAGEKHVPVELALHIAKDVSCALSELHSKHIIHRDIKSENILFDCDRKRDDGTPTVKLCDFDSAVPLRSPLHACCIAHVGSPPPCVCVGTPRWMAPEVMRTMYEKNTYGLEADIWSFGCLLLEMLTLQIPYFGVPDLHVHDSLQMGKRPQLTDELEALSSTNEPTMIQSGEELEKSDAETDTLEFLVDLFHRCVEENPNDRPTAEEIHEMLVGHTRHTSSKC 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi303g00012 1096 ProSitePatterns Serine/Threonine protein kinases active-site signature. 905 917 IPR008271 GO:0004672|GO:0006468
Vivi303g00012 1096 MobiDBLite consensus disorder prediction 460 476 - -
Vivi303g00012 1096 FunFam Leucine-rich repeat protein kinase family protein 47 291 - -
Vivi303g00012 1096 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 105 1092 - -
Vivi303g00012 1096 FunFam Leucine-rich repeat protein kinase family protein 810 1091 - -
Vivi303g00012 1096 MobiDBLite consensus disorder prediction 316 339 - -
Vivi303g00012 1096 PRINTS Leucine-rich repeat signature 178 191 - -
Vivi303g00012 1096 PRINTS Leucine-rich repeat signature 221 234 - -
Vivi303g00012 1096 SUPERFAMILY Protein kinase-like (PK-like) 774 1085 IPR011009 -
Vivi303g00012 1096 SMART LRR_typ_2 245 271 IPR003591 -
Vivi303g00012 1096 SMART LRR_typ_2 221 244 IPR003591 -
Vivi303g00012 1096 SMART LRR_typ_2 175 198 IPR003591 -
Vivi303g00012 1096 Pfam Protein kinase domain 789 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi303g00012 1096 Pfam Leucine rich repeat 203 258 IPR001611 GO:0005515
Vivi303g00012 1096 SMART LRR_sd22_2 175 200 - -
Vivi303g00012 1096 SMART LRR_sd22_2 221 242 - -
Vivi303g00012 1096 ProSiteProfiles Leucine-rich repeat profile. 223 244 IPR001611 GO:0005515
Vivi303g00012 1096 Pfam Ethylene-responsive protein kinase Le-CTR1 640 720 - -
Vivi303g00012 1096 Gene3D Transferase(Phosphotransferase) domain 1 763 1095 - -
Vivi303g00012 1096 SMART LRR_bac_2 221 240 - -
Vivi303g00012 1096 SMART LRR_bac_2 198 217 - -
Vivi303g00012 1096 SMART LRR_bac_2 175 194 - -
Vivi303g00012 1096 MobiDBLite consensus disorder prediction 1 52 - -
Vivi303g00012 1096 SUPERFAMILY Cysteine proteinases 665 723 IPR038765 -
Vivi303g00012 1096 ProSiteProfiles Protein kinase domain profile. 772 1085 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi303g00012 1096 Gene3D Ribonuclease Inhibitor 25 286 IPR032675 -
Vivi303g00012 1096 SMART serkin_6 768 1085 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi303g00012 1096 ProSiteProfiles Leucine-rich repeat profile. 177 198 IPR001611 GO:0005515
Vivi303g00012 1096 MobiDBLite consensus disorder prediction 460 480 - -
Vivi303g00012 1096 SUPERFAMILY L domain-like 39 266 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi303g00012 815 1081 MAP Kinase Kinase Kinase AT1G63700 29.259 8.27e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-2 Vivi303g00012 Pkinase 3.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi303g00012 - - tpra:123913087 1846.63