Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi302g00022 ATGGCTGGTAGATTACCTGGTGTTGGGTTGTCACCAAGGAAAAAATCAGAACAACATCACAACAGACATGAAAATTATTCTAACTATAGAGACTCTTACCTAAGAAAATCATTGGATTTGGATGCACCATGGACTTCAATTACTACTACCTTAGATGAAAATGCTTTCAAAGCCAAACAAAGACTTGAGAAGAAACTTGGTTCCTTCTTTTCTTCTTCCAGGTCAAGTGAACAAAATCCTAGAAAAGAAGAAGAAAGTAGAAGCAGGATTCAGAAGAAAGACACAGGATTAGGTCGAAAATTACTAGAGAGTGCATGGTTATTACGTGGAAATAGGTTTAAGAAAGAGAGAAATGTTTGTGCTGTGTGCCTAGAAGATTTCCATCAAAATGAAGAGGTTATGAATCTCTCTTGCTCACATAAGTATCATTCAGCATGTCTTCTCCCTTGGCTTGAAAGACATCCTCATTGTCCTTATTGTAGGACTGTTATTGAGCCAAAGGATTAA 507 0.3708 MAGRLPGVGLSPRKKSEQHHNRHENYSNYRDSYLRKSLDLDAPWTSITTTLDENAFKAKQRLEKKLGSFFSSSRSSEQNPRKEEESRSRIQKKDTGLGRKLLESAWLLRGNRFKKERNVCAVCLEDFHQNEEVMNLSCSHKYHSACLLPWLERHPHCPYCRTVIEPKD 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi302g00022 168 MobiDBLite consensus disorder prediction 77 93 - -
Vivi302g00022 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 167 IPR013083 -
Vivi302g00022 168 SMART ring_2 120 160 IPR001841 -
Vivi302g00022 168 MobiDBLite consensus disorder prediction 13 28 - -
Vivi302g00022 168 MobiDBLite consensus disorder prediction 69 93 - -
Vivi302g00022 168 SUPERFAMILY RING/U-box 119 167 - -
Vivi302g00022 168 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 60 162 - -
Vivi302g00022 168 MobiDBLite consensus disorder prediction 1 28 - -
Vivi302g00022 168 ProSiteProfiles Zinc finger RING-type profile. 120 161 IPR001841 -
Vivi302g00022 168 CDD RING-H2_PA-TM-RING 119 161 - -
Vivi302g00022 168 Pfam Ring finger domain 119 161 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi302g00022 120 164 C3H Transcription Factor Family AT3G58720 51.111 5.59e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi302g00022 - - vvo:131628575 339.732