Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi302g00021 ATGGCTGGTAGATTACCTGGTGTTGGGTTGTCACCAAGGAAAAAATCAGAACAACATCACAACAGACATGAAAATTATTCTAACTATAGAGACTCTTACCTAAGAAAATCATTGGATTTGGATGCACCATGGACTTCAATTACTACTACCTTAGATGAAAATGCTTTCAAAGCCAAACAAAGACTTGAGAAGAAACTTGGTTCCTTCTTTTCTTCTTCCAGGTCATTTTCTAATGACAGGTCAAGTGAACAAAATCCTAGAAAAGAAGAAGAAAGTAGAAGCAGGATTCAGAAGAAAGACACAGGATTAGGTCGAAAATTACTAGAGAGTGCATGGTTATTACGTGGAAATAGGTTTAAGAAAGAGAGAAATGTTTGTGCTGTGTGCCTAGAAGATTTCCATCAAAATGAAGAGGTTATGAATCTCTCTTGCTCACATAAGTATCATTCAGCATGTCTTCTCCCTTGGCTTGAAAGACATCCTCATTGTCCTTATTGTAGGACTGTTATTGAGCCAAAGGATTAA 525 0.3695 MAGRLPGVGLSPRKKSEQHHNRHENYSNYRDSYLRKSLDLDAPWTSITTTLDENAFKAKQRLEKKLGSFFSSSRSFSNDRSSEQNPRKEEESRSRIQKKDTGLGRKLLESAWLLRGNRFKKERNVCAVCLEDFHQNEEVMNLSCSHKYHSACLLPWLERHPHCPYCRTVIEPKD 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi302g00021 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 173 IPR013083 -
Vivi302g00021 174 ProSiteProfiles Zinc finger RING-type profile. 126 167 IPR001841 -
Vivi302g00021 174 SMART ring_2 126 166 IPR001841 -
Vivi302g00021 174 MobiDBLite consensus disorder prediction 13 28 - -
Vivi302g00021 174 Pfam Ring finger domain 125 167 IPR001841 -
Vivi302g00021 174 SUPERFAMILY RING/U-box 125 173 - -
Vivi302g00021 174 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 67 168 - -
Vivi302g00021 174 MobiDBLite consensus disorder prediction 81 99 - -
Vivi302g00021 174 MobiDBLite consensus disorder prediction 1 28 - -
Vivi302g00021 174 MobiDBLite consensus disorder prediction 71 99 - -
Vivi302g00021 174 CDD RING-H2_PA-TM-RING 125 167 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi302g00021 126 170 C3H Transcription Factor Family AT3G58720 51.111 5.22e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi302g00021 - - vvo:131628575 355.14