Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi302g00012 ATGCTTGACCTTTTTCATGAGGATATAAGTAAAATACATTCACAAGAAGAAGCTGGTAAAGTTACTGCCGCCGAAGATTGCTCACCTGAGTTATCTTGTATCCCCGAACATTATCCTCTTAACTTACTTGGCATGCCAGTACCAGATGGTACCTATGTACTTGATGGTTCTACGGAAGATTCAGTTGAAGGTGGACATTATATTAAGGAAGTAGGTCAGATTGAGGCAAACATTGAAGTTCCAAATTGTGATGGCAAAAACATTATTAGTAAAATGCAATCTCCAACAACAATGGATAGAAATCCAATGGAGAGATGTAATGATGAGGTTGTTTGTATCGGACGCCATATACAAGGGCACGCTCTAGATAGGCGCGGTCTAGAGAATAATATGACCGTTAATGCTTCAAACATCCGTTCTTATACAGCAAAATCTGATGAGTGGAATGCAAGTAATCAAATCTGTGGAAGTACTCACATAATGCCGTTTCAGGATCTAACGAATAAACAGTTGAATCCTCCAAACTTGAAAAGGAAGAGGACAGGTCAGATCGATCTGGATGCTTCTGGCTTAACACATGAAAATCAGGAGGAAAGTGCTGATTTCTATCAGAGTATCCCGAAAAAGAAGACGAAAACGGGGGAATTAGAAGGGGCATGCAATAACTGTAAATGTATAAAATCACAGTGTTTGAAACGATATTGTGAATGCTTTGCTGCTGGAGTTTACTGCACAGGACCTTGCTCATGTCAAAACTGCTTGAATAAACCTATTAATGAAAATATTATCCTGGAAGCTCGCAAGAAGAATGTGCCTAAAGTTGAGGACGCCAACAAAAGCGGATGCAACTGCAATAAATCGGGGTGCATGAAGAAATATTGCGAATGCTTTAAGGGTGGTGTTGGTTGCTCCCCAAGCTGTACCTGTCAAGGATGTGAGAATATAAATGGTAGAAAGATAGATGACTGTATTGTTTGGAAGCCACATCTTATCTGGGACTGGAACAAACAGAAGCATTACAAATCCGAGAACATCTTGTACTGA 1044 0.3994 MLDLFHEDISKIHSQEEAGKVTAAEDCSPELSCIPEHYPLNLLGMPVPDGTYVLDGSTEDSVEGGHYIKEVGQIEANIEVPNCDGKNIISKMQSPTTMDRNPMERCNDEVVCIGRHIQGHALDRRGLENNMTVNASNIRSYTAKSDEWNASNQICGSTHIMPFQDLTNKQLNPPNLKRKRTGQIDLDASGLTHENQEESADFYQSIPKKKTKTGELEGACNNCKCIKSQCLKRYCECFAAGVYCTGPCSCQNCLNKPINENIILEARKKNVPKVEDANKSGCNCNKSGCMKKYCECFKGGVGCSPSCTCQGCENINGRKIDDCIVWKPHLIWDWNKQKHYKSENILY 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi302g00012 347 ProSiteProfiles CRC domain profile. 219 317 IPR005172 -
Vivi302g00012 347 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 279 320 IPR044522 GO:0003700
Vivi302g00012 347 SMART CXC_2 277 318 IPR033467 -
Vivi302g00012 347 SMART CXC_2 218 259 IPR033467 -
Vivi302g00012 347 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 280 314 IPR005172 -
Vivi302g00012 347 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 221 256 IPR005172 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi302g00012 199 319 CPP Transcription Factor Family AT3G22760 48.026 3.45e-36 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vivi302g00012 TCR 4.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi302g00012 - - psat:127096180 356.681