Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi302g00010 ATGGCTGTACCAGTGCAACTAAGGATATTGGCATTAACCGCAACACCAGGATCAAAGCAGCAGACTGTCCAGGATGTCATTGATAATTTGCATATCTCGAAGCTTGAACATCGCAGTGAAACTGACCACGATGTTATGCCGTATGTTCACGACAGGAAGATAGAGTTAATACAGGTTGCAATGGGCCAAGATGCTGTAGAAATAAACAATAAGTTTTTGGAAGTGATACGCCCTATCGTAACCAAGCTTACTAATATTGGAGCAATTCAGAATAGAGATTATCGTACTTTGAGCCCTTGTGTATTACTTGAAATGAGGGAAAAGTTTCGTCAAGGGCAGATGCAAGATCCTTCACATAACAACTACATAGATGTTGAAGGGTATTTTGGAGTTCTCATTACTCTTTATTACATCCACAAACTTCTTTCAAGTCATGGAATAAGACCAGCGCATGAGATGCTTGAAAGAAAATTGAAGCAAGGGTTTTTTGCAAAATATATGAGTAAAAATGAAGATATTCTGAAAGCAAGGCAACTAATGCACCAAAGCTTGTCCCATGGCGCGTCGAGTCCCAAGTTGTCCAAAATGCTAGAAGTATTACTGGAGCATTTCAAAACCAATGATCCACAAAGCTCCAGGGTGATTATTTTCTCCAATTTCAGAGAAAGTGTCAGGGACATAATGGTTGCAATTGGAGGTACCGGGGATCAAATTAGAGCTACTGAGTTTATTGGTCAAAGTTCAGGAAAAACAACGAAAGGTCAGTCCCAGAAAGTTCAACAGGCTGTGCTTAAGAAATTTCGGTCCGGTGCCTACAATGTCATTGTTGCTACATCCATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCGCTTAGAATGATTCAGCGAATGGGGAGAACAGGAAGAAAACATGATGGCCGAGTTGTAGTTTTGGCTTGTGAAGGGGCAGAGTTGAAAGGCTACTTGAAAAAAAAGGCAAAGGGCAAGACTATAAGCAAACACATGCGAAATGGGGGCATAAATAGCTTTGTCTTTCATCCCAGTCCAAGGATGATTCCCCACATCTTTAAACCTGAAGTTCAATATGTTGAACTGTCTATTGAGAAATTTATTCCTCGTCAGAATAATGTGAGAGAAAACCATCTTCAAATTTCTTCATCCAAAGACAAACTCACTCTTGCTGAAACTGATTTACTCGAAAAATATTTTCACTCTACTGGAGAAAATAGATGTAGATTGTCTCTTATCGCCTTCCCTCACTCTCAGACATTTCCTTCTAGAGTTCATAAAGTGAAGCATTCCTGTGGAACATTGATGTTTATAGACATGATGCAACGTTTGCAAGGACTGGCTGCATGTGCAAGAGATAGCGAAAATTCTACCCTTCAGGAAGGAAGGTGTTTAGGAAATAGTAAGCCGCATGTCAGTACTGAACTCGATGATGCTAAAAATGACAATAGGGATACAACGGGAATAAATATAGATTTTGAAAATCGTCTGGAGGTGGATTCTTGTCATATGGAAATTCAAACCAAAGACTTTGTTGATCTAACTCTACCAGATAATACTTTCTGTGACACGGGCGAGTGTCAAGAGGAAATAGCTGATGGTGATGAGACAATTCCCGAGACTCCAGATGCCAAGAGGACTTTGTCAAATGGAGGAGCTAATGCCACTGAAATAGCAAATTCTGTTGAGAAGCAGACTTCTTCACTGGCTGCGGATGCATGCGATAACGGCATGAGAGATGAAGAGCTTAGCCCTCGTTTAACTAATTTGATTATAAGTGGTGTGGTTCCCGAGTCTCCCATTGAGGAAAGAGGGAAGTCAAGAAACAGGTTTGTCATCCGAGGCTGTATTTCACCTGTTCATCTCCAGGCAGAACAAGATGCTGGCTCTTTGAGTTGTAGGGAAACTGAAAATGTCATAATTGATAGTGGCAATGGTAAAAATGTATGTACTTCCCCTGTTAATGATAGTGACAATGGTAAAGCTGTATGTACCTCCCCTGTTTATGATAGTGGCAATGGTAAAAATGTATGTACTTCCCCTGTTTATGATAGTGACAATGGTAAAAATGTACGTACCTCCCCTGTTAATGAAACCCGAACCCCTTTGCTTGAGCTGAAGAATTGTGCGATTAGAAGAGGACGAGTCTTTGTTTCTCAAATTGAAGAAAGGCATATGCATACTGTTGGTCCAAGCATCAGTGAAGAATCACATCCAAGTTGTGGCGAAATGTCTGTAAGCATTAAACCTGCTCGCAAATTTAAAAGGTTGAGAAAAATTGAAGATACTGAAAGTAATATGAATCAGAAAAACAATAATATTTTTGATTCAACGGCAAACTTTTCAAAACCAGCTCCTGCCACCAATCCCACACGATATAAGCACGGCCAAGGTATAAAGAAACCAGCTAACGTGAGAGTGAGAGACTTCATTGAGGAGGAAGCCGAGGTATCTTCAGATGCCTCCGTATCTAATGATGAAGATGCCGAGGATGAAAATTCTGTTGACAGTTTCATAGATGATCAAACTAATCTTACAGCAGCCACTCAGCCTGGAGCTAGTAGAATGGACATGATGGCAATTTACAGGCGTTCATTGCTCAGTCAAACACCGATGAATGGAGGGCCAAAGTTTTCCACCACCTTCAGTCCTGACAATGTGACTATGACAGCCAGTATTGGTGAAAGCGGTAATTCATCAGTCAAGACAGTGAGTCGTTTCCAGACAGAACATACCAGTCATTCAGCTAATCGAACGTCAGAATCTATAAGTACTGACTGTATGACCTCAGAAGCAGGGCCTTCAACTAGTGTTCCAACTGAGACAGATACAAGAAGCCGTAAAAGAAGATTGACATTTCATAATTCTGGATACTTTCCAAGTGTGAATCTTGAACACGAATTTGCACTTCAATCAAAGAAAGAATCAGTGAATACCAATGCAACCATAGATGTTCTATGTGACGATCAATTCCTTAATACTATTGATCTTGATGAGTTGGAGGCGCAAGCAACTTCTATTCTTAAACGGAAATCGGATTCTTCAAATCAGAAGCAAGATGTAAATCCTCAATCTCATGAACCGAACCTTGATGTTATTATGACTCCATCATTCGACCTTGGTATATGA 3174 0.403 MAVPVQLRILALTATPGSKQQTVQDVIDNLHISKLEHRSETDHDVMPYVHDRKIELIQVAMGQDAVEINNKFLEVIRPIVTKLTNIGAIQNRDYRTLSPCVLLEMREKFRQGQMQDPSHNNYIDVEGYFGVLITLYYIHKLLSSHGIRPAHEMLERKLKQGFFAKYMSKNEDILKARQLMHQSLSHGASSPKLSKMLEVLLEHFKTNDPQSSRVIIFSNFRESVRDIMVAIGGTGDQIRATEFIGQSSGKTTKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVVVLACEGAELKGYLKKKAKGKTISKHMRNGGINSFVFHPSPRMIPHIFKPEVQYVELSIEKFIPRQNNVRENHLQISSSKDKLTLAETDLLEKYFHSTGENRCRLSLIAFPHSQTFPSRVHKVKHSCGTLMFIDMMQRLQGLAACARDSENSTLQEGRCLGNSKPHVSTELDDAKNDNRDTTGINIDFENRLEVDSCHMEIQTKDFVDLTLPDNTFCDTGECQEEIADGDETIPETPDAKRTLSNGGANATEIANSVEKQTSSLAADACDNGMRDEELSPRLTNLIISGVVPESPIEERGKSRNRFVIRGCISPVHLQAEQDAGSLSCRETENVIIDSGNGKNVCTSPVNDSDNGKAVCTSPVYDSGNGKNVCTSPVYDSDNGKNVRTSPVNETRTPLLELKNCAIRRGRVFVSQIEERHMHTVGPSISEESHPSCGEMSVSIKPARKFKRLRKIEDTESNMNQKNNNIFDSTANFSKPAPATNPTRYKHGQGIKKPANVRVRDFIEEEAEVSSDASVSNDEDAEDENSVDSFIDDQTNLTAATQPGASRMDMMAIYRRSLLSQTPMNGGPKFSTTFSPDNVTMTASIGESGNSSVKTVSRFQTEHTSHSANRTSESISTDCMTSEAGPSTSVPTETDTRSRKRRLTFHNSGYFPSVNLEHEFALQSKKESVNTNATIDVLCDDQFLNTIDLDELEAQATSILKRKSDSSNQKQDVNPQSHEPNLDVIMTPSFDLGI 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi302g00010 1057 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 1 1042 - -
Vivi302g00010 1057 SMART helicmild6 226 316 IPR001650 -
Vivi302g00010 1057 MobiDBLite consensus disorder prediction 830 852 - -
Vivi302g00010 1057 CDD FANCM_ID 66 180 IPR039686 GO:0006281|GO:0043138
Vivi302g00010 1057 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 192 363 IPR001650 -
Vivi302g00010 1057 MobiDBLite consensus disorder prediction 475 498 - -
Vivi302g00010 1057 MobiDBLite consensus disorder prediction 783 812 - -
Vivi302g00010 1057 CDD SF2_C_FANCM_Hef 190 324 - -
Vivi302g00010 1057 Gene3D - 3 49 IPR027417 -
Vivi302g00010 1057 Coils Coil 1012 1032 - -
Vivi302g00010 1057 MobiDBLite consensus disorder prediction 834 852 - -
Vivi302g00010 1057 MobiDBLite consensus disorder prediction 1023 1046 - -
Vivi302g00010 1057 Gene3D - 185 350 IPR027417 -
Vivi302g00010 1057 MobiDBLite consensus disorder prediction 908 961 - -
Vivi302g00010 1057 Pfam Helicase conserved C-terminal domain 199 315 IPR001650 -
Vivi302g00010 1057 MobiDBLite consensus disorder prediction 783 802 - -
Vivi302g00010 1057 MobiDBLite consensus disorder prediction 908 956 - -
Vivi302g00010 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 327 IPR027417 -
Vivi302g00010 1057 FunFam ATP-dependent RNA helicase, putative 177 350 - -
Vivi302g00010 1057 Gene3D hef helicase domain 63 184 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi302g00010 165 314 Eukaryotic Initiation Factors Gene Family AT3G13920 28.947 4.85e-07 51.6