Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi302g00009 ATGGATTCCCATAATCCTTACGAGATTCTCGACGACGATGATGGATTTGATTGGGAAGCAGCTGCGAGAGAAATTGATGCGGTTTGCGAAATAAGAAGTGACGCGAAAACGAACGGAAGCGAAGCGGAAAAGGTTTGTCAAAAGGGAAAAAAGAATGGAAAGGGAAAGGGGAAGCAATCGACTCTTGATAATTTTGTTGGAATTGCAAATAAGGAAACTGAAACGAATCACGTTCCGGAAAATGACTGTGAAGAATCTATCTGTAACCATCACATTGACACTGAAGCAGCCAAAACTTGGATATATCCAGTTAATGTTCCTCTCCGTGACTATCAATTCCATATTGCCCAAACTGCACTCTTTCAAAACACTCTGGTCGCCTTGCCAACAGGACTTGGCAAAACTCTCATTGCTGCTGTTGTCATGTATAACTACTTTAGATGGTTTCCTGAGGGAAAAATAGTATTTGCTGCTCCTTCTCGACCACTTGTCATGCAGCAGATAGAAGCATGCCATAACATTGCCGGGATACCGCAAGAATGGACAGTCGATATGACTGGTCAGTTAAGTCCTCCTAAAAGAGCTCGTTTGTGGAAAACAAAGCGAGTTTTCTTTGTCACTCCACAAGTTTTGGAAAAAGATATTCATTCTGGTAAATGTTTGGTGAAGTACTTGGTATGTTTGGTGATTGATGAAGCTCACAGAGCAATGGGAAATTACTCGTATTGTGAAGCAGTTCGTGAGTTGATGGCTGTACCAGTGCAACTAAGGATATTGGCATTAACCGCAACACCAGGATCAAAGCAGCAGACTGTCCAGGATGTCATTGATAATTTGCATATCTCGAAGCTTGAACATCGCAGTGAAACTGACCACGATGTTATGCCGTATGTTCACGACAGGAAGATAGAGTTAATACAGGTTGCAATGGGCCAAGATGCTGTAGAAATAAACAATAAGTTTTTGGAAGTGATACGCCCTATCGTAACCAAGCTTACTAATATTGGAGCAATTCAGAATAGAGATTATCGTACTTTGAGCCCTTGTGTATTACTTGAAATGAGGGAAAAGTTTCGTCAAGGGCAGATGCAAGATCCTTCACATAACAACTACATAGATGTTGAAGGGTATTTTGGAGTTCTCATTACTCTTTATTACATCCACAAACTTCTTTCAAGTCATGGAATAAGACCAGCGCATGAGATGCTTGAAAGAAAATTGAAGCAAGGGTTTTTTGCAAAATATATGAGTAAAAATGAAGATATTCTGAAAGCAAGGCAACTAATGCACCAAAGCTTGTCCCATGGCGCGTCGAGTCCCAAGTTGTCCAAAATGCTAGAAGTATTACTGGAGCATTTCAAAACCAATGATCCACAAAGCTCCAGGGTGATTATTTTCTCCAATTTCAGAGAAAGTGTCAGGGACATAATGGTTGCAATTGGAGGTACCGGGGATCAAATTAGAGCTACTGAGTTTATTGGTCAAAGTTCAGGAAAAACAACGAAAGGTCAGTCCCAGAAAGTTCAACAGGCTGTGCTTAAGAAATTTCGGTCCGGTGCCTACAATGTCATTGTTGCTACATCCATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCGCTTAGAATGATTCAGCGAATGGGGAGAACAGGAAGAAAACATGATGGCCGAGTTGTAGTTTTGGCTTGTGAAGGGGCAGAGTTGAAAGGCTACTTGAAAAAAAAGGCAAAGGGCAAGACTATAAGCAAACACATGCGAAATGGGGGCATAAATAGCTTTGTCTTTCATCCCAGTCCAAGGATGATTCCCCACATCTTTAAACCTGAAGTTCAATATGTTGAACTGTCTATTGAGAAATTTATTCCTCGTCAGAATAATGTGAGAGAAAACCATCTTCAAATTTCTTCATCCAAAGACAAACTCACTCTTGCTGAAACTGATTTACTCGAAAAATATTTTCACTCTACTGGAGAAAATAGATGTAGATTGTCTCTTATCGCCTTCCCTCACTCTCAGACATTTCCTTCTAGAGTTCATAAAGTGAAGCATTCCTGTGGAACATTGATGTTTATAGACATGATGCAACGTTTGCAAGGACTGGCTGCATGTGCAAGAGATAGCGAAAATTCTACCCTTCAGGAAGGAAGGTGTTTAGGAAATAGTAAGCCGCATGTCAGTACTGAACTCGATGATGCTAAAAATGACAATAGGGATACAACGGGAATAAATATAGATTTTGAAAATCGTCTGGAGGTGGATTCTTGTCATATGGAAATTCAAACCAAAGACTTTGTTGATCTAACTCTACCAGATAATACTTTCTGTGACACGGGCGAGTGTCAAGAGGAAATAGCTGATGGTGATGAGACAATTCCCGAGACTCCAGATGCCAAGAGGACTTTGTCAAATGGAGGAGCTAATGCCACTGAAATAGCAAATTCTGTTGAGAAGCAGACTTCTTCACTGGCTGCGGATGCATGCGATAACGGCATGAGAGATGAAGAGCTTAGCCCTCGTTTAACTAATTTGATTATAAGTGGTGTGGTTCCCGAGTCTCCCATTGAGGAAAGAGGGAAGTCAAGAAACAGGTTTGTCATCCGAGGCTGTATTTCACCTGTTCATCTCCAGGCAGAACAAGATGCTGGCTCTTTGAGTTGTAGGGAAACTGAAAATGTCATAATTGATAGTGGCAATGGTAAAAATGTATGTACTTCCCCTGTTAATGATAGTGACAATGGTAAAGCTGTATGTACCTCCCCTGTTTATGATAGTGGCAATGGTAAAAATGTATGTACTTCCCCTGTTTATGATAGTGACAATGGTAAAAATGTACGTACCTCCCCTGTTAATGAAACCCGAACCCCTTTGCTTGAGCTGAAGAATTGTGCGATTAGAAGAGGACGAGTCTTTGTTTCTCAAATTGAAGAAAGGCATATGCATACTGTTGGTCCAAGCATCAGTGAAGAATCACATCCAAGTTGTGGCGAAATGTCTGTAAGCATTAAACCTGCTCGCAAATTTAAAAGGTTGAGAAAAATTGAAGATACTGAAAGTAATATGAATCAGAAAAACAATAATATTTTTGATTCAACGGCAAACTTTTCAAAACCAGCTCCTGCCACCAATCCCACACGATATAAGCACGGCCAAGGTATAAAGAAACCAGCTAACGTGAGAGTGAGAGACTTCATTGAGGAGGAAGCCGAGGTATCTTCAGATGCCTCCGTATCTAATGATGAAGATGCCGAGGATGAAAATTCTGTTGACAGTTTCATAGATGATCAAACTAATCTTACAGCAGCCACTCAGCCTGGAGCTAGTAGAATGGACATGATGGCAATTTACAGGCGTTCATTGCTCAGTCAAACACCGATGAATGGAGGGCCAAAGTTTTCCACCACCTTCAGTCCTGACAATGTGACTATGACAGCCAGTATTGGTGAAAGCGGTAATTCATCAGTCAAGACAGTGAGTCGTTTCCAGACAGAACATACCAGTCATTCAGCTAATCGAACGTCAGAATCTATAAGTACTGACTGTATGACCTCAGAAGCAGGGCCTTCAACTAGTGTTCCAACTGAGACAGATACAAGAAGCCGTAAAAGAAGATTGACATTTCATAATTCTGGATACTTTCCAAGTGTGAATCTTGAACACGAATTTGCACTTCAATCAAAGAAAGAATCAGTGAATACCAATGCAACCATAGATGTTCTATGTGACGATCAATTCCTTAATACTATTGATCTTGATGAGTTGGAGGCGCAAGCAACTTCTATTCTTAAACGGAAATCGGATTCTTCAAATCAGAAGCAAGATGTAAATCCTCAATCTCATGAACCGAACCTTGATGTTATTATGACTCCATCATTCGACCTTGGTATATGA 3921 0.4058 MDSHNPYEILDDDDGFDWEAAAREIDAVCEIRSDAKTNGSEAEKVCQKGKKNGKGKGKQSTLDNFVGIANKETETNHVPENDCEESICNHHIDTEAAKTWIYPVNVPLRDYQFHIAQTALFQNTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFAAPSRPLVMQQIEACHNIAGIPQEWTVDMTGQLSPPKRARLWKTKRVFFVTPQVLEKDIHSGKCLVKYLVCLVIDEAHRAMGNYSYCEAVRELMAVPVQLRILALTATPGSKQQTVQDVIDNLHISKLEHRSETDHDVMPYVHDRKIELIQVAMGQDAVEINNKFLEVIRPIVTKLTNIGAIQNRDYRTLSPCVLLEMREKFRQGQMQDPSHNNYIDVEGYFGVLITLYYIHKLLSSHGIRPAHEMLERKLKQGFFAKYMSKNEDILKARQLMHQSLSHGASSPKLSKMLEVLLEHFKTNDPQSSRVIIFSNFRESVRDIMVAIGGTGDQIRATEFIGQSSGKTTKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVVVLACEGAELKGYLKKKAKGKTISKHMRNGGINSFVFHPSPRMIPHIFKPEVQYVELSIEKFIPRQNNVRENHLQISSSKDKLTLAETDLLEKYFHSTGENRCRLSLIAFPHSQTFPSRVHKVKHSCGTLMFIDMMQRLQGLAACARDSENSTLQEGRCLGNSKPHVSTELDDAKNDNRDTTGINIDFENRLEVDSCHMEIQTKDFVDLTLPDNTFCDTGECQEEIADGDETIPETPDAKRTLSNGGANATEIANSVEKQTSSLAADACDNGMRDEELSPRLTNLIISGVVPESPIEERGKSRNRFVIRGCISPVHLQAEQDAGSLSCRETENVIIDSGNGKNVCTSPVNDSDNGKAVCTSPVYDSGNGKNVCTSPVYDSDNGKNVRTSPVNETRTPLLELKNCAIRRGRVFVSQIEERHMHTVGPSISEESHPSCGEMSVSIKPARKFKRLRKIEDTESNMNQKNNNIFDSTANFSKPAPATNPTRYKHGQGIKKPANVRVRDFIEEEAEVSSDASVSNDEDAEDENSVDSFIDDQTNLTAATQPGASRMDMMAIYRRSLLSQTPMNGGPKFSTTFSPDNVTMTASIGESGNSSVKTVSRFQTEHTSHSANRTSESISTDCMTSEAGPSTSVPTETDTRSRKRRLTFHNSGYFPSVNLEHEFALQSKKESVNTNATIDVLCDDQFLNTIDLDELEAQATSILKRKSDSSNQKQDVNPQSHEPNLDVIMTPSFDLGI 1306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi302g00009 1306 CDD DEXDc_FANCM 106 287 IPR044749 GO:0005524
Vivi302g00009 1306 SMART ultradead3 104 304 IPR014001 -
Vivi302g00009 1306 CDD FANCM_ID 315 429 IPR039686 GO:0006281|GO:0043138
Vivi302g00009 1306 MobiDBLite consensus disorder prediction 724 747 - -
Vivi302g00009 1306 Pfam Helicase conserved C-terminal domain 448 564 IPR001650 -
Vivi302g00009 1306 Coils Coil 1261 1281 - -
Vivi302g00009 1306 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 441 612 IPR001650 -
Vivi302g00009 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 576 IPR027417 -
Vivi302g00009 1306 SMART helicmild6 475 565 IPR001650 -
Vivi302g00009 1306 MobiDBLite consensus disorder prediction 1083 1101 - -
Vivi302g00009 1306 MobiDBLite consensus disorder prediction 1157 1205 - -
Vivi302g00009 1306 MobiDBLite consensus disorder prediction 1157 1210 - -
Vivi302g00009 1306 Gene3D - 104 298 IPR027417 -
Vivi302g00009 1306 Pfam Type III restriction enzyme, res subunit 121 265 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vivi302g00009 1306 FunFam Fanconi anemia, complementation group M 103 298 - -
Vivi302g00009 1306 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 115 283 IPR014001 -
Vivi302g00009 1306 Gene3D hef helicase domain 312 433 - -
Vivi302g00009 1306 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 4 1291 - -
Vivi302g00009 1306 CDD SF2_C_FANCM_Hef 439 573 - -
Vivi302g00009 1306 Gene3D - 434 599 IPR027417 -
Vivi302g00009 1306 MobiDBLite consensus disorder prediction 1079 1101 - -
Vivi302g00009 1306 MobiDBLite consensus disorder prediction 1272 1295 - -
Vivi302g00009 1306 FunFam ATP-dependent RNA helicase, putative 427 599 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi302g00009 414 563 Eukaryotic Initiation Factors Gene Family AT3G13920 28.947 5.16e-07 52.0