Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi302g00008 ATGTTAAGGCTAGAACATGTCTTAAAGGCTCGTCCCACATTCAAGTCACTTTACGAGGTCCTTGTGGGATTTGATTGGGAAGCAGCTGCGAGAGAAATTGATGCGGTTTGCGAAATAAGAAGTGACGCGAAAACGAACGGAAGCGAAGCGGAAAAGGTTTGTCAAAAGGGAAAAAAGAATGGAAAGGGAAAGGGGAAGCAATCGACTCTTGATAATTTTGTTGGAATTGCAAATAAGGAAACTGAAACGAATCACGTTCCGGAAAATGACTGTGAAGAATCTATCTGTAACCATCACATTGACACTGAAGCAGCCAAAACTTGGATATATCCAGTTAATGTTCCTCTCCGTGACTATCAATTCCATATTGCCCAAACTGCACTCTTTCAAAACACTCTGGTCGCCTTGCCAACAGGACTTGGCAAAACTCTCATTGCTGCTGTTGTCATGTATAACTACTTTAGATGGTTTCCTGAGGGAAAAATAGTATTTGCTGCTCCTTCTCGACCACTTGTCATGCAGCAGATAGAAGCATGCCATAACATTGCCGGGATACCGCAAGAATGGACAGTCGATATGACTGGTCAGTTAAGTCCTCCTAAAAGAGCTCGTTTGTGGAAAACAAAGCGAGTTTTCTTTGTCACTCCACAAGTTTTGGAAAAAGATATTCATTCTGGTAAATGTTTGGTGAAGTACTTGGTATGTTTGGTGATTGATGAAGCTCACAGAGCAATGGGAAATTACTCGTATTGTGAAGCAGTTCGTGAGTTGATGGCTGTACCAGTGCAACTAAGGATATTGGCATTAACCGCAACACCAGGATCAAAGCAGCAGACTGTCCAGGATGTCATTGATAATTTGCATATCTCGAAGCTTGAACATCGCAGTGAAACTGACCACGATGTTATGCCGTATGTTCACGACAGGAAGATAGAGTTAATACAGGTTGCAATGGGCCAAGATGCTGTAGAAATAAACAATAAGTTTTTGGAAGTGATACGCCCTATCGTAACCAAGCTTACTAATATTGGAGCAATTCAGAATAGAGATTATCGTACTTTGAGCCCTTGTGTATTACTTGAAATGAGGGAAAAGTTTCGTCAAGGGCAGATGCAAGATCCTTCACATAACAACTACATAGATGTTGAAGGGTATTTTGGAGTTCTCATTACTCTTTATTACATCCACAAACTTCTTTCAAGTCATGGAATAAGACCAGCGCATGAGATGCTTGAAAGAAAATTGAAGCAAGGGTTTTTTGCAAAATATATGAGTAAAAATGAAGATATTCTGAAAGCAAGGCAACTAATGCACCAAAGCTTGTCCCATGGCGCGTCGAGTCCCAAGTTGTCCAAAATGCTAGAAGTATTACTGGAGCATTTCAAAACCAATGATCCACAAAGCTCCAGGGTGATTATTTTCTCCAATTTCAGAGAAAGTGTCAGGGACATAATGGTTGCAATTGGAGGTACCGGGGATCAAATTAGAGCTACTGAGTTTATTGGTCAAAGTTCAGGAAAAACAACGAAAGGTCAGTCCCAGAAAGTTCAACAGGCTGTGCTTAAGAAATTTCGGTCCGGTGCCTACAATGTCATTGTTGCTACATCCATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCGCTTAGAATGATTCAGCGAATGGGGAGAACAGGAAGAAAACATGATGGCCGAGTTGTAGTTTTGGCTTGTGAAGGGGCAGAGTTGAAAGGCTACTTGAAAAAAAAGGCAAAGGGCAAGACTATAAGCAAACACATGCGAAATGGGGGCATAAATAGCTTTGTCTTTCATCCCAGTCCAAGGATGATTCCCCACATCTTTAAACCTGAAGTTCAATATGTTGAACTGTCTATTGAGAAATTTATTCCTCGTCAGAATAATGTGAGAGAAAACCATCTTCAAATTTCTTCATCCAAAGACAAACTCACTCTTGCTGAAACTGATTTACTCGAAAAATATTTTCACTCTACTGGAGAAAATAGATGTAGATTGTCTCTTATCGCCTTCCCTCACTCTCAGACATTTCCTTCTAGAGTTCATAAAGTGAAGCATTCCTGTGGAACATTGATGTTTATAGACATGATGCAACGTTTGCAAGGACTGGCTGCATGTGCAAGAGATAGCGAAAATTCTACCCTTCAGGAAGGAAGGTGTTTAGGAAATAGTAAGCCGCATGTCAGTACTGAACTCGATGATGCTAAAAATGACAATAGGGATACAACGGGAATAAATATAGATTTTGAAAATCGTCTGGAGGTGGATTCTTGTCATATGGAAATTCAAACCAAAGACTTTGTTGATCTAACTCTACCAGATAATACTTTCTGTGACACGGGCGAGTGTCAAGAGGAAATAGCTGATGGTGATGAGACAATTCCCGAGACTCCAGATGCCAAGAGGACTTTGTCAAATGGAGGAGCTAATGCCACTGAAATAGCAAATTCTGTTGAGAAGCAGACTTCTTCACTGGCTGCGGATGCATGCGATAACGGCATGAGAGATGAAGAGCTTAGCCCTCGTTTAACTAATTTGATTATAAGTGGTGTGGTTCCCGAGTCTCCCATTGAGGAAAGAGGGAAGTCAAGAAACAGGTTTGTCATCCGAGGCTGTATTTCACCTGTTCATCTCCAGGCAGAACAAGATGCTGGCTCTTTGAGTTGTAGGGAAACTGAAAATGTCATAATTGATAGTGGCAATGGTAAAAATGTATGTACTTCCCCTGTTAATGATAGTGACAATGGTAAAGCTGTATGTACCTCCCCTGTTTATGATAGTGGCAATGGTAAAAATGTATGTACTTCCCCTGTTTATGATAGTGACAATGGTAAAAATGTACGTACCTCCCCTGTTAATGAAACCCGAACCCCTTTGCTTGAGCTGAAGAATTGTGCGATTAGAAGAGGACGAGTCTTTGTTTCTCAAATTGAAGAAAGGCATATGCATACTGTTGGTCCAAGCATCAGTGAAGAATCACATCCAAGTTGTGGCGAAATGTCTGTAAGCATTAAACCTGCTCGCAAATTTAAAAGGTTGAGAAAAATTGAAGATACTGAAAGTAATATGAATCAGAAAAACAATAATATTTTTGATTCAACGGCAAACTTTTCAAAACCAGCTCCTGCCACCAATCCCACACGATATAAGCACGGCCAAGGTATAAAGAAACCAGCTAACGTGAGAGTGAGAGACTTCATTGAGGAGGAAGCCGAGGTATCTTCAGATGCCTCCGTATCTAATGATGAAGATGCCGAGGATGAAAATTCTGTTGACAGTTTCATAGATGATCAAACTAATCTTACAGCAGCCACTCAGCCTGGAGCTAGTAGAATGGACATGATGGCAATTTACAGGCGTTCATTGCTCAGTCAAACACCGATGAATGGAGGGCCAAAGTTTTCCACCACCTTCAGTCCTGACAATGTGACTATGACAGCCAGTATTGGTGAAAGCGGTAATTCATCAGTCAAGACAGTGAGTCGTTTCCAGACAGAACATACCAGTCATTCAGCTAATCGAACGTCAGAATCTATAAGTACTGACTGTATGACCTCAGAAGCAGGGCCTTCAACTAGTGTTCCAACTGAGACAGATACAAGAAGCCGTAAAAGAAGATTGACATTTCATAATTCTGGATACTTTCCAAGTGTGAATCTTGAACACGAATTTGCACTTCAATCAAAGAAAGAATCAGTGAATACCAATGCAACCATAGATGTTCTATGTGACGATCAATTCCTTAATACTATTGATCTTGATGAGTTGGAGGCGCAAGCAACTTCTATTCTTAAACGGAAATCGGATTCTTCAAATCAGAAGCAAGATGTAAATCCTCAATCTCATGAACCGAACCTTGATGTTATTATGACTCCATCATTCGACCTTGGTATATGA 3945 0.4061 MLRLEHVLKARPTFKSLYEVLVGFDWEAAAREIDAVCEIRSDAKTNGSEAEKVCQKGKKNGKGKGKQSTLDNFVGIANKETETNHVPENDCEESICNHHIDTEAAKTWIYPVNVPLRDYQFHIAQTALFQNTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFAAPSRPLVMQQIEACHNIAGIPQEWTVDMTGQLSPPKRARLWKTKRVFFVTPQVLEKDIHSGKCLVKYLVCLVIDEAHRAMGNYSYCEAVRELMAVPVQLRILALTATPGSKQQTVQDVIDNLHISKLEHRSETDHDVMPYVHDRKIELIQVAMGQDAVEINNKFLEVIRPIVTKLTNIGAIQNRDYRTLSPCVLLEMREKFRQGQMQDPSHNNYIDVEGYFGVLITLYYIHKLLSSHGIRPAHEMLERKLKQGFFAKYMSKNEDILKARQLMHQSLSHGASSPKLSKMLEVLLEHFKTNDPQSSRVIIFSNFRESVRDIMVAIGGTGDQIRATEFIGQSSGKTTKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVVVLACEGAELKGYLKKKAKGKTISKHMRNGGINSFVFHPSPRMIPHIFKPEVQYVELSIEKFIPRQNNVRENHLQISSSKDKLTLAETDLLEKYFHSTGENRCRLSLIAFPHSQTFPSRVHKVKHSCGTLMFIDMMQRLQGLAACARDSENSTLQEGRCLGNSKPHVSTELDDAKNDNRDTTGINIDFENRLEVDSCHMEIQTKDFVDLTLPDNTFCDTGECQEEIADGDETIPETPDAKRTLSNGGANATEIANSVEKQTSSLAADACDNGMRDEELSPRLTNLIISGVVPESPIEERGKSRNRFVIRGCISPVHLQAEQDAGSLSCRETENVIIDSGNGKNVCTSPVNDSDNGKAVCTSPVYDSGNGKNVCTSPVYDSDNGKNVRTSPVNETRTPLLELKNCAIRRGRVFVSQIEERHMHTVGPSISEESHPSCGEMSVSIKPARKFKRLRKIEDTESNMNQKNNNIFDSTANFSKPAPATNPTRYKHGQGIKKPANVRVRDFIEEEAEVSSDASVSNDEDAEDENSVDSFIDDQTNLTAATQPGASRMDMMAIYRRSLLSQTPMNGGPKFSTTFSPDNVTMTASIGESGNSSVKTVSRFQTEHTSHSANRTSESISTDCMTSEAGPSTSVPTETDTRSRKRRLTFHNSGYFPSVNLEHEFALQSKKESVNTNATIDVLCDDQFLNTIDLDELEAQATSILKRKSDSSNQKQDVNPQSHEPNLDVIMTPSFDLGI 1314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi302g00008 1314 SMART helicmild6 483 573 IPR001650 -
Vivi302g00008 1314 CDD DEXDc_FANCM 114 295 IPR044749 GO:0005524
Vivi302g00008 1314 Pfam Helicase conserved C-terminal domain 456 572 IPR001650 -
Vivi302g00008 1314 CDD FANCM_ID 323 437 IPR039686 GO:0006281|GO:0043138
Vivi302g00008 1314 FunFam Fanconi anemia, complementation group M 111 306 - -
Vivi302g00008 1314 MobiDBLite consensus disorder prediction 732 755 - -
Vivi302g00008 1314 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 123 291 IPR014001 -
Vivi302g00008 1314 Gene3D - 112 306 IPR027417 -
Vivi302g00008 1314 Coils Coil 1269 1289 - -
Vivi302g00008 1314 Pfam Type III restriction enzyme, res subunit 129 273 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vivi302g00008 1314 Gene3D hef helicase domain 320 441 - -
Vivi302g00008 1314 FunFam ATP-dependent RNA helicase, putative 435 607 - -
Vivi302g00008 1314 MobiDBLite consensus disorder prediction 1091 1109 - -
Vivi302g00008 1314 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 584 IPR027417 -
Vivi302g00008 1314 MobiDBLite consensus disorder prediction 1165 1213 - -
Vivi302g00008 1314 MobiDBLite consensus disorder prediction 1165 1218 - -
Vivi302g00008 1314 Gene3D - 442 607 IPR027417 -
Vivi302g00008 1314 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 23 1299 - -
Vivi302g00008 1314 CDD SF2_C_FANCM_Hef 447 581 - -
Vivi302g00008 1314 SMART ultradead3 112 312 IPR014001 -
Vivi302g00008 1314 MobiDBLite consensus disorder prediction 1087 1109 - -
Vivi302g00008 1314 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 449 620 IPR001650 -
Vivi302g00008 1314 MobiDBLite consensus disorder prediction 1280 1303 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi302g00008 422 571 Eukaryotic Initiation Factors Gene Family AT3G13920 28.947 5.57e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi302g00008 K10896 - gmx:100820078 1544.25