Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g08036 ATGAACATCAACATTTCAAGAAACAACAACAACAGCAACGGAGGAACCCCACAGGCTTGTTCTGCTTGTAAATACCAACGTAGGAAGTGCGGTCCAACCTGTATTCTCGCACCATATTTTCCTCACGAGCGTCAAAAACAGTTCCTCAACGCCCATAAATTATTCGGCGTTGGTAAAATCACCAACATGCTTAAGAATGTTCCTCCTGAATCCAGAGATGTAACCATGTCTACTATTGTTTATCAAGCTGATATGCGTGCTTTGGATCCTGTTGGTGGTTGTTATCGACATATTCAGACTCTGCAGGCTCAGATTGATTATTTCACTGTTGAACTTCATTTTGTTCTTCAACAGCTTGCTATTTGTAGAGCCGCAGCTGCTTCTTCTTCATCCAATCATCATCATTATAATGATATCGTCGTTACTGGTAACGTTAATGGTAACGGTATCGACGATAATAATAATATTAATCATAATGATGATGAAGGTATTATTGTCCCTCCTCATTATCAACATCAACAGAATTTTGTTGAGGAACAACTGGACGATGTTAACATGTTTCAACCGCAACAGCAACAGCAGATGCAACCGCAATATGTTGTTGATGATGTTGTCGGGGTTAACCCTAATTATGTGCCTTTGCAAGAGGATCTTAATACATGGGTGAATTCTATACCGCTGTCGCCGTTAACGTTGCAGGATAATAAAAAGGAGGAGGAGGTGGATCAAGAACCGGTTGGTGATGATCGTTTGAATGATGATCAGAAACCTGTTTTTGACCTAATTAATGAGACAAATTCTTCGGATATTGTCAGACGTAGTACTAATGATCCGAGACAGCAGCTATGA 849 0.4016 MNINISRNNNNSNGGTPQACSACKYQRRKCGPTCILAPYFPHERQKQFLNAHKLFGVGKITNMLKNVPPESRDVTMSTIVYQADMRALDPVGGCYRHIQTLQAQIDYFTVELHFVLQQLAICRAAAASSSSNHHHYNDIVVTGNVNGNGIDDNNNINHNDDEGIIVPPHYQHQQNFVEEQLDDVNMFQPQQQQQMQPQYVVDDVVGVNPNYVPLQEDLNTWVNSIPLSPLTLQDNKKEEEVDQEPVGDDRLNDDQKPVFDLINETNSSDIVRRSTNDPRQQL 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g08036 282 ProSiteProfiles LOB domain profile. 18 119 IPR004883 -
Vivi2g08036 282 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 18 172 - -
Vivi2g08036 282 MobiDBLite consensus disorder prediction 233 257 - -
Vivi2g08036 282 MobiDBLite consensus disorder prediction 259 282 - -
Vivi2g08036 282 Pfam Lateral organ boundaries (LOB) domain 19 114 IPR004883 -
Vivi2g08036 282 MobiDBLite consensus disorder prediction 233 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g08036 Vivi-Chr2 230542179 230543745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g08036 18 135 AS2 family AT3G13850 59.322 3.37e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi2g08036 LOB 7.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g08036 - - mtr:11423276 292.737