Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g08035 ATGAAAACTTCCATGGCAAGCAACATAGCAGAAAGGGTGCAATATCCATTAGACTCTTCCTCCTACAAGATCATCGACGAGATTGGCGCCGGTAACAGCGCTGTCGTCTATAAAGCAATCTGCATCCCCATAAACTCCACACCAGTTGCTATAAAATCCATAGACTTAGATCGTTCACGGCCCGACCTCGACGATGTTCGACGTGAAGCGAAGACGTTATCACTTCTTTCTCACCCTAACATCCTAAAAGCTCATTGTTCCTTCACCATGGACCACCGTCTTTGGGTGGTTATGCCATTCATGGCAGGAGGTTCATTACAGTCCATAATCTCTCACTCTTTCCAAAACGGCTTATCAGAACAATCCATAGCTGTTATTCTCAAAGACACTCTCAATGCTCTTTCTTACCTTCATGGACAAGGTCACCTTCATAGAGATATCAAATCTGGTAACATCCTTGTTGACTCAAATGGATTAGTGAAACTTGCTGATTTTGGTGTTTCTGCTTCCATTTATGAATCTAACAACTCAGTAGGAGTAGGAGCATGTTCTTCTTATTCGTCTTCGTCTTCTAATTCTTCTTCTTCTCTTATGTTTACTGATTTTGCTGGAACTCCTTATTGGATGGCTCCTGAGGTTATCCATTCTCATAATGGTTACAGTTTCAAAGCTGATATTTGGTCTTTTGGGATAACTGCTTTGGAGCTAGCACATGGAAGGCCACCACTTTCTCATCTTCCTCCTTCTAAGTCAATGATGCTTAACATCACTAAGAGGTTTAGGTTTTCTGATTTTGATAAATATATTTATAAGGGAAGTGGTGGAAGTAATAAATTTTCTAAGGCTTTTAAGGATATGGTTGCTTCTTGTTTGAATCAAGATCCTACAAAAAGGCCTTCAGCTGAGAAGTTGCTTAAGCATTCGTTCTTTAAGAACTGTAAGGGGCCAGAGTTTTTGGTGAAGAATGTGTTGAATGGTTTGCCTAGTGTTGAGAAAAGGTACAAAGAGATCAAAGTTACAATGGGTGCAGACTCAAAGGAGAATGATGATGATGGTGATGATGAGGATTCAGTGGTGAATGTGAAGCAGAGAAGAATTAGTGGTTGGAATTTCAATGAAGATGGGTTGAAACTTGAGCCGGTATTCCCAAAGGATCAGTGCAGAGAAGATCATGATGTGGTGAAACAAGTTCGGTTTGAAGAAGAAAACGCGATCCAAGAGGAGGAAGATGTTGCATCATCAGGAACTGTGATTGAGACAAGCCCCAATGCTTCTGATGTGGTTGAACTTGATATCGATGATGTTAGTGGTGTTGTGAAGAACCGTGAAGCTACCTTGGCAACTCTGAGTGTGTTGAAAGGGAGCTTGGAACAAGAACTAGGACAGGTGAAGTTTCTGATGAGTCTAATTGGTGGAAATGAAGAGGAGAGTCATGTGGCCGAAAACGAGGAGAAAACGGTGCAGGAGATCTCTAAGTTGAGGATGGAGTTAGAAACTGAGAGGAAGAAGAATTTGCAGTTGGAGTTGCAGCTTGAGAATATCAAGCTTCACCTAATTTCTTCTACTGTCAATAGTCCTACAAGTTAA 1587 0.4127 MKTSMASNIAERVQYPLDSSSYKIIDEIGAGNSAVVYKAICIPINSTPVAIKSIDLDRSRPDLDDVRREAKTLSLLSHPNILKAHCSFTMDHRLWVVMPFMAGGSLQSIISHSFQNGLSEQSIAVILKDTLNALSYLHGQGHLHRDIKSGNILVDSNGLVKLADFGVSASIYESNNSVGVGACSSYSSSSSNSSSSLMFTDFAGTPYWMAPEVIHSHNGYSFKADIWSFGITALELAHGRPPLSHLPPSKSMMLNITKRFRFSDFDKYIYKGSGGSNKFSKAFKDMVASCLNQDPTKRPSAEKLLKHSFFKNCKGPEFLVKNVLNGLPSVEKRYKEIKVTMGADSKENDDDGDDEDSVVNVKQRRISGWNFNEDGLKLEPVFPKDQCREDHDVVKQVRFEEENAIQEEEDVASSGTVIETSPNASDVVELDIDDVSGVVKNREATLATLSVLKGSLEQELGQVKFLMSLIGGNEEESHVAENEEKTVQEISKLRMELETERKKNLQLELQLENIKLHLISSTVNSPTS 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g08035 528 SMART serkin_6 22 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g08035 528 Coils Coil 480 517 - -
Vivi2g08035 528 Gene3D Transferase(Phosphotransferase) domain 1 104 359 - -
Vivi2g08035 528 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 14 436 IPR047173 GO:0043539
Vivi2g08035 528 ProSitePatterns Protein kinases ATP-binding region signature. 28 52 IPR017441 GO:0005524
Vivi2g08035 528 FunFam Serine/threonine-protein kinase BLUS1 104 356 - -
Vivi2g08035 528 ProSiteProfiles Protein kinase domain profile. 22 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g08035 528 FunFam Serine/threonine-protein kinase BLUS1 11 100 - -
Vivi2g08035 528 Pfam Protein kinase domain 22 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g08035 528 SUPERFAMILY Protein kinase-like (PK-like) 19 316 IPR011009 -
Vivi2g08035 528 Gene3D Phosphorylase Kinase; domain 1 10 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g08035 Vivi-Chr2 230540194 230542161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g08035 5 506 MAP Kinase Kinase Kinase Kinase AT4G14480 54.207 4.50e-176 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Vivi2g08035 Pkinase 3.1e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g08035 K08835 - gmx:100820227 643.654