Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g08023 ATGGACCTCGTCCATGGAACAATTGAAGCTACCATCTTCAATGCAACTCCTTACTCTCCTTCATTTCCTTTCAATTGTATATGCATAAATGGAAAGCCTGCTTATGTGACAATCAAGATAGACAACAAGAAAGTTGCCAAAACAACACAAGAAAGTGAACGGATTTGGAACCAAACATTTCAGATTCATTGTGCTCATCTATCTGATTCAACCATCACCATTACACTGAAAACATCATGTTCCATATTAGGAAAACACCACATCAAGGCACAACAGTTGAAGGAAGAGAGTTTGATTGATGGATTCTTCCCTCTCCTCATGGAAAATGGTAAACCAAATCAAGAACTAAAATTAAGGTTTATATTATGGTTCAAGCCAGCAAATTTGGAACCAAGTTGGTCAAAGCTACTAAATAGTGAAGAGTTTCAAGGGCTAAGGGATGCTGCATTCCCACAAAGATCTAACTGTCATGTTAAGCTCTATCATGATGCTCATCATTCACCTACTTTTCAACCTCCTTTAGATATTTGTGGAGTTCCAAGATTGCTTTGGGAAGATGTTTATAAAGCTATTGAGGGTGCAAAGTATTTAGTTTATATTGCAGGCTGGTCTTTCAATCCAAAGATGGTTTTGGTTAGGGATCCTAAAACAGAAATCCCACATGCTAGAGAAATAAAGTTAGGTGACTTGTTGAAGAAGAAAGCGGAAGAAGGTGTTTCTGTAAGGATTATGATTTGGGATGATGAGACATCATTGCCACTTATCAAGAACAAAGGTGTGATGAACACACATGATGAGGATGCATTTTCTTACTTTAAACACACAAAAGTAATATGCAGAAAGTGTCCTAGATTACACCATAAATTCCCAACAATCTTTGCTCATCATCAGAAAACCGTAACCGTGGATACAAAGGCTCCTAACTCTGTCAATGACAGGGAAATTATGAGTTTCTTGGGAGGGTTAGATTTGTGCGACGGTCGATATGATACCGAGAAACATTCGTTGTTTCAAACACTTACTAAGGAATCACATTACCATGATTTCTACCAAACAAGCATTGTTGGAGCAAGCCTCAAGAAAGGAGGTCCAAGAGAGCCTTGGCATGATGCTCATGCTTGTGTTACCGGCGAGTCAGCTTGGGATGTTTTAACCAATTTTGAACAAAGATGGGCAAAACAATGTGATTCATCACTTCTAGTCCCTGCAAACACCTTACAAAATCTTGTTCCTGTTTCCTCAACCAGCACTTCCATCGAGAGGAACTGGAAAGTTCAAGTATATCGGTCAATCGACCATGTCTCGGCTAGCCAACTGTTTCGAAAACTAACAGTTGAGACTAGCATCCATGAAGCTTATGTCGAAGCAATTAGGCGTGCCGACAGGTTTGTGTACATTGAAAACCAATATTTCATTGGAGGGTGTCATTTGTGGCAGAAAGATAGAAACAGTGGCTGCAGAAATTTGATACCTATTGAGATTGCACTCAAGGTAGTCAACAAGATTAAAGCAAGAGAAAGATTTGCAGTGTATATAGTCATACCGATGTGGCCAGAAGGAGGACCTGAGAGTGAACCAGTTCAAGATATACTGCATTGGACAAGAGAAACAATGGCAATGATGTATAAGTTGATTGGAGAAGCAATTACAGAAAGTGGTGAGCCAGGACATCCAAGAGACTACTTGAATTTCTTTTGCCTTGCAAATAGGGAAAAGAAGGAAAATGAAGAATATATTCCTCCACATTCTCCTCATCCTGAAACTGAATATTGGAATGCACAGAAAAATAGAAGATTCATGGTTTATGTACACTCCAAGCTCATGATAGTGGATGACCTATATATATTAATAGGATCAGCAAATGTGAACCAAAGATCAATGGACGGGCAAAGAGACACGGAGATTGCAATTGGAGGTTATCAAACTCAGGAAGGAGTTGATGACCACATGACCAAAGGCGATATTCATGCATACAGAATGTCGATGTGGTATGAGCATACAGGGAGAGCTGAGGACTTGTTTTTGAAGCCAGAAAGTTTAGAATGTGTGCAGAGAATGTGTTCAATAGGAGATAAAATGTGGAAAATCTATAGTAGTGAAGAAATTATGGACATGGAAGGTGTGCATCTAGTAACTTACCCTATGACAGTAACAAAAGATGGATCTGTGGAGGACTTAACTAATGGGGGGGAACATTTTCCTGATACAAAATCTCTAGTGAAAGGGAGAAGATCAAAGTTATTACCCTCTGTCATTACTACTTAG 2265 0.3921 MDLVHGTIEATIFNATPYSPSFPFNCICINGKPAYVTIKIDNKKVAKTTQESERIWNQTFQIHCAHLSDSTITITLKTSCSILGKHHIKAQQLKEESLIDGFFPLLMENGKPNQELKLRFILWFKPANLEPSWSKLLNSEEFQGLRDAAFPQRSNCHVKLYHDAHHSPTFQPPLDICGVPRLLWEDVYKAIEGAKYLVYIAGWSFNPKMVLVRDPKTEIPHAREIKLGDLLKKKAEEGVSVRIMIWDDETSLPLIKNKGVMNTHDEDAFSYFKHTKVICRKCPRLHHKFPTIFAHHQKTVTVDTKAPNSVNDREIMSFLGGLDLCDGRYDTEKHSLFQTLTKESHYHDFYQTSIVGASLKKGGPREPWHDAHACVTGESAWDVLTNFEQRWAKQCDSSLLVPANTLQNLVPVSSTSTSIERNWKVQVYRSIDHVSASQLFRKLTVETSIHEAYVEAIRRADRFVYIENQYFIGGCHLWQKDRNSGCRNLIPIEIALKVVNKIKARERFAVYIVIPMWPEGGPESEPVQDILHWTRETMAMMYKLIGEAITESGEPGHPRDYLNFFCLANREKKENEEYIPPHSPHPETEYWNAQKNRRFMVYVHSKLMIVDDLYILIGSANVNQRSMDGQRDTEIAIGGYQTQEGVDDHMTKGDIHAYRMSMWYEHTGRAEDLFLKPESLECVQRMCSIGDKMWKIYSSEEIMDMEGVHLVTYPMTVTKDGSVEDLTNGGEHFPDTKSLVKGRRSKLLPSVITT 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g08023 754 SUPERFAMILY Phospholipase D/nuclease 419 683 - -
Vivi2g08023 754 Pfam C2 domain 34 105 IPR000008 -
Vivi2g08023 754 Gene3D Endonuclease Chain A 180 421 - -
Vivi2g08023 754 Pfam Phospholipase D C terminal 671 743 IPR024632 -
Vivi2g08023 754 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 599 626 IPR001736 GO:0003824
Vivi2g08023 754 CDD PLDc_pPLD_like_2 441 643 - -
Vivi2g08023 754 SMART pld_4 291 328 IPR001736 GO:0003824
Vivi2g08023 754 SMART pld_4 599 626 IPR001736 GO:0003824
Vivi2g08023 754 Pfam Phospholipase D Active site motif 602 626 IPR001736 GO:0003824
Vivi2g08023 754 Pfam Phospholipase D Active site motif 292 328 IPR001736 GO:0003824
Vivi2g08023 754 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 120 IPR035892 -
Vivi2g08023 754 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 291 328 IPR001736 GO:0003824
Vivi2g08023 754 PANTHER PHOSPHOLIPASE D 4 736 IPR015679 -
Vivi2g08023 754 PIRSF PLD_plant 3 754 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vivi2g08023 754 SUPERFAMILY Phospholipase D/nuclease 144 402 - -
Vivi2g08023 754 Gene3D Endonuclease Chain A 440 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g08023 Vivi-Chr2 230366394 230370064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g08023 26 754 Phospholipase D Gene Family (Wang group) AT1G55180 62.450 0.0 972
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g08023 K01115 - gmx:100807431 1348.18