Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g08021 ATGGACACCGAAGAAGACCCTCCTCAAAATCAAGCCAAAAGACAGAAATGCTCAGCATGCTATAAACAATATAAAAAGAAAGAACATCTTATTGAGCACATGAAAACCTCTTACCACTCTATCCATCAGCCGGAGTGTGCGATCTGTAGAAAGCACTGCAAATCTTTTGAATCTCTGAGGGAGCATCTTATGGGACCTTTGGCTAGAGGACTTTGTTCAGCGATATTCTCGAAAGGGGGTTGTAAACTTTGTTTGACACTAACTGATAGTCCTGCTTCTCTCAGTGAGCATCTAGAAACCTGTCAACTATCTGCTCCTGTTCCTCTTGGCACAAGTGAATTGCCCTATACAGACTCCAATATCGATTTTTTGGATTCTTATGATGAAAACGATGCTGACCGGCGTCCTAAAGCAGTTGCGTTGGACTGTGAAATGGTTGGGGGTGGAAGTGATGGATCACTGGAAGTTTGTGCTAGAGTATGCTTGGTTGACGAAGATGAGAACTTAATCTTGCACACATATGTAAAGCCTCGACTCCCTGTTACTAATTATAGGTATGATATAACTGGGCTGACCGAAGAGCATCTTCGAGATGGTGTGCCACTTAAAGAAGTTCGGGAAAAGATATTGCAAATTTTATACAATGGAGAGTCCATTGGAAAAGTTAGATTGGATGGTGGAAAGGCCAGGCTTCTTGTAGGGCATTCGTTGGCATATGATTTAGATTGCTTGGAAATGAGTTATCCTGATCACTTGTTGAGAGACACTGCAAAGTACTGTCCATTGATGAAGACAAATGGTTCTAGCCATTCGCTCAAGTATCTTACCAGAACATATCTAGGTTATGATATCCAAACCGGCACACACGACCCATATGAAGATTGTATTTCTGTGATGAGGTTGTACAAGAGAATGCGAGGTCAAAGCCATGAGGAGAGAAGCTACCGAAAGTTGATGGGAAAGTTGACTCAAAGTGACAACATTGTTGAAATGTGTGATATGTGGAGGTCCAAGGAACTGGACAACCTCACTCCAGATGAACTTTATGCCATCTCAGAATCAGACTATAAGTGTTGGTGTTTGGATCTGAAGCCAAAATTAGCAAATGCTTAG 1113 0.4196 MDTEEDPPQNQAKRQKCSACYKQYKKKEHLIEHMKTSYHSIHQPECAICRKHCKSFESLREHLMGPLARGLCSAIFSKGGCKLCLTLTDSPASLSEHLETCQLSAPVPLGTSELPYTDSNIDFLDSYDENDADRRPKAVALDCEMVGGGSDGSLEVCARVCLVDEDENLILHTYVKPRLPVTNYRYDITGLTEEHLRDGVPLKEVREKILQILYNGESIGKVRLDGGKARLLVGHSLAYDLDCLEMSYPDHLLRDTAKYCPLMKTNGSSHSLKYLTRTYLGYDIQTGTHDPYEDCISVMRLYKRMRGQSHEERSYRKLMGKLTQSDNIVEMCDMWRSKELDNLTPDELYAISESDYKCWCLDLKPKLANA 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g08021 370 Pfam Exonuclease 139 302 IPR013520 -
Vivi2g08021 370 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 313 IPR047021 GO:0004527
Vivi2g08021 370 Gene3D Classic Zinc Finger 2 65 - -
Vivi2g08021 370 SUPERFAMILY Ribonuclease H-like 138 308 IPR012337 -
Vivi2g08021 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Vivi2g08021 370 Gene3D - 134 325 IPR036397 GO:0003676
Vivi2g08021 370 CDD REX4_like 139 303 IPR037431 GO:0006364|GO:0008408
Vivi2g08021 370 SMART exoiiiendus 137 311 IPR013520 -
Vivi2g08021 370 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g08021 Vivi-Chr2 230341054 230343811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g08021 1 362 C2H2 Transcription Factor Family AT3G27970 51.093 2.47e-135 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g08021 K18327 - gmx:100788682 579.326