Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g08020 ATGAATCGAGAACAGAAGAGAGGGAAGGTTGAAAAAGGTTCTGATGGTGCTGAGAAGGTTATTGTTGCTGTTAAGGCGTCGAAGGAAATTCCGAAGACTGCGCTTGTTTGGTCTTTAACTCATGTTGTTCAGCCTGGTGATTGCATTACATTGCTTGTGGTTGTGCCTTCACAGAGTTCAGGTCGGAAATTATGGGGCTTCCCGCGGTTTGCTGGTGACTGTGCTAATGGACACAAGAAGTCGACAACGGCTGGAGCTAGTTCGGAGAACAAGAATGATATCACTGATTCTTGTTCTCAAATGATCCTTCAGCTTCATGATGTCTATGATCCTAATAAGATAAATGTCAGGATTAAAATTGTTTCTGGATCACCTTGTGGAGCAGTGGCTGCCGAAGCTAAGAAAGTACAAGCCAAATGGGTTGTATTAGACAAACATCTCAAGCATGAAGAAAAGCAATGCATGGAAGAGCTGCAATGTAACATTGCGGTTATGAAGGGTTCTCAACCTAAGACACTTCGCTTGAATTTGGTTGGATCACAAAAGAAGGATCATGAAGAAACATGTCAACTACCTTCTGAGCAGCATGAGATTCCTGGAAAACAATCCAACAAGAAGAATGGTTCTTTGAAGTCCACATTAGGGGTTCTCACGCCAACTAGCAGCCCTGAGTTAGAGACATCGTTTACTGCAACCGAAGCTGGCACTTCATCGGTTTCAAGCTCTGATCATGGAACTTCACCATTTTGTGTCTCCGAGATCATCGCCAAGTCAAAGAAAGAGGAGACTATCGAAGAAAGTCAAGAAATTGATGATAGTATTTCTGACACAGACAGTGAAAGTTTATGCACGTCTTCTTCCGCAAGCTTGAGATTTCAACCGTGGATGTCAGATTTATTTTTGCGTAAACAGTCATCTCAACGTGAGGAGAAAAGGTCAGAGAGTTCGCGTAACATGCTTCAAACTTCCACAACAAGAGCTTTGCTAGAGAAGTTCTCGAGGCTTGACAGAGAAGCCGAAATTGAAATCTCAACCTCTATGACATACTTGGAATTCAGCGGAAGCGTTAGAGAAGCAGTAGCGTTATCTAGAAACGCCGTACCTGGCCCACCTCCATTATGTTCAATATGTCAACACAAGGCACCTGTTTTTGGAAAACCTCCAAGATGGTTCAGTTATGCTGATTTGGAGCAGGCCACTGATGGATTTTCACCAACTAATTTCTTGGCAGAAGGAGGGTTTGGATCTGTTCACAGGGGAGTTCTACCCGAGGGGCAGGTCATTGCTGTCAAGCAACATAAATTGGCTAGCTCTCAGGGTGATCTTGAGTTCTGCTCGGAGGTAGAAGTCCTGAGTTGTGCACAGCATCGGAATGTTGTTATGTTGATTGGGTTCTGTATAGAGGATAAGAGAAGACTTCTGGTTTATGAATATATATGCAATGGATCATTGGATACTCATTTATATGGGAGACAGCAGAAACCGTTAGAATGGTCTGCGCGGCAGAAAATTGCTGTCGGAGCTGCTCGAGGGTTGCGATATCTTCATGAAGAGTGCAGAGTGGGATGTATTGTCCACCGTGACATGCGGCCTAACAACATTCTTATCACTCATGATTTTGAACCGCTGGTCGGTGATTTTGGACTTGCAAGGTGGCAGCCTGATGGAGACACTGGAGTGGATACTCGAGTTATTGGGACATTTGGGTATTTGGCTCCTGAGTATGCTCAAAGTGGTCAAATAACTGAAAAGGCCGATGTTTATTCATTTGGCGTGGTATTAGTGGAGCTTGTGACAGGACGCAAAGCTGTCGATATCAACCGGCCCAAAGGACAGCAGTGTCTTACGGAGTGGGCGCGACCACTGTTAGAAGAGTATGCCATTGAAGAACTGATTGATCCAAGGTTGGGAAGTCACTATTCCGAACACGAGGTCTCTTGCATGCTACATGCAGCATCCTTATGCATAAGGCGAGATCCTTATTCTAGACCACGCATGTCACAGGTTTTGCGAATACTAGAGGGTGACACGGTCATGGAATCACCACGCCAATACAGTGGTTCCCCTTCCATATGA 2076 0.448 MNREQKRGKVEKGSDGAEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPSQSSGRKLWGFPRFAGDCANGHKKSTTAGASSENKNDITDSCSQMILQLHDVYDPNKINVRIKIVSGSPCGAVAAEAKKVQAKWVVLDKHLKHEEKQCMEELQCNIAVMKGSQPKTLRLNLVGSQKKDHEETCQLPSEQHEIPGKQSNKKNGSLKSTLGVLTPTSSPELETSFTATEAGTSSVSSSDHGTSPFCVSEIIAKSKKEETIEESQEIDDSISDTDSESLCTSSSASLRFQPWMSDLFLRKQSSQREEKRSESSRNMLQTSTTRALLEKFSRLDREAEIEISTSMTYLEFSGSVREAVALSRNAVPGPPPLCSICQHKAPVFGKPPRWFSYADLEQATDGFSPTNFLAEGGFGSVHRGVLPEGQVIAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDTHLYGRQQKPLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVDTRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDINRPKGQQCLTEWARPLLEEYAIEELIDPRLGSHYSEHEVSCMLHAASLCIRRDPYSRPRMSQVLRILEGDTVMESPRQYSGSPSI 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g08020 691 SUPERFAMILY Protein kinase-like (PK-like) 387 676 IPR011009 -
Vivi2g08020 691 MobiDBLite consensus disorder prediction 183 245 - -
Vivi2g08020 691 Gene3D Phosphorylase Kinase; domain 1 375 478 - -
Vivi2g08020 691 MobiDBLite consensus disorder prediction 260 282 - -
Vivi2g08020 691 Pfam Protein tyrosine and serine/threonine kinase 408 672 IPR001245 GO:0004672|GO:0006468
Vivi2g08020 691 Gene3D HUPs 4 156 IPR014729 -
Vivi2g08020 691 ProSiteProfiles Protein kinase domain profile. 403 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g08020 691 Gene3D Transferase(Phosphotransferase) domain 1 479 687 - -
Vivi2g08020 691 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 479 682 - -
Vivi2g08020 691 PANTHER OS01G0750732 PROTEIN 152 680 - -
Vivi2g08020 691 FunFam Dual-specific kinase DSK1-like 11 166 - -
Vivi2g08020 691 CDD STKc_IRAK 409 675 - -
Vivi2g08020 691 MobiDBLite consensus disorder prediction 195 245 - -
Vivi2g08020 691 ProSitePatterns Tyrosine protein kinases specific active-site signature. 524 536 IPR008266 GO:0004672|GO:0006468
Vivi2g08020 691 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 375 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g08020 Vivi-Chr2 230332062 230336139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g08020 383 676 Trihelix Transcription Factor Family AT1G70460 52.492 2.16e-99 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vivi2g08020 PK_Tyr_Ser-Thr 6.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g08020 - - gmx:100789216 1124.38