Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g08008 ATGGCAACAGTACCGGGACCTCTTGTTTGGGAGATCGTGAAGAGGAACAACTCTTTCTTGGTTAAGGAGTTCGGTAACAACACTCAGAGTGTTCAGTTTAGCAGAGAGCCAAACAATCTCTACAACCTCAACTCCTACAAGTACTCTGGTTTGGCAAACAAGAAAACTGTTACTATTCAGCCAGCTGGCAAAGATCAGTCTGTGTTGTTGGCCACCACCAAGCCAAGGAAGCAGAACAAGCCTTCTGCTTTGCTTCACAAATCTGTGATGAAGAAGGAGTTCAGGAGGATGGCAAAGGCTGTTCAAAACCAGGTGGCAGATAACTACTACAGACCTGATCTCAAGAAGGCTGCTCTTGCAAGGTTGAGTGTTGTTAACAGAAGCCTCAAAGTTGCAAAGTCTGGTGCAAAGAAGAGGAACAGACATGCTTAA 432 0.4537 MATVPGPLVWEIVKRNNSFLVKEFGNNTQSVQFSREPNNLYNLNSYKYSGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLKVAKSGAKKRNRHA 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g08008 143 FunFam 60S ribosomal protein L28 5 133 - -
Vivi2g08008 143 Gene3D - 7 133 - -
Vivi2g08008 143 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Vivi2g08008 143 PANTHER 60S RIBOSOMAL PROTEIN L28 1 142 IPR002672 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g08008 Vivi-Chr2 230166481 230169450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g08008 1 143 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 70.629 6.90e-73 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g08008 K02903 - gmx:100500189 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g03749 7 103457123 103458523 Vivi2g08008 2 230166481 230169450 ECH
Vivi2g08008 2 230166481 230169450 Vivi2g08008 2 230166481 230169450 ECH
Vivi2g08008 2 230166481 230169450 Vivi7g03749 7 103457123 103458523 PCT