Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g08002 ATGGAGAATCTTAGTTGGGATGAAGACTCCCAATTTGTTGCCAACATACCAATCTTGTGGAACACTCAACCACAAGATCTTGAAAGAGAGTACTCAATGTCCAATCCAAGTTCAACTTTTCTTAGTTATCAAATGCAAGAGATGCAGAAGGTTCAATCAGGAGCTGGAATCAGTTGGGAAGAAAGTTTAATATTTCAATCATACCCTTCACTTTCAGTCAATATCAACACACCTAACAATTATGTGCCAGATTGCAACATGGTCCACCAGCAAATCAGCAAGAGTACTACTACCAGCTCTCTTGAATCATCACTTGAATGTTTGCTTTCAGCCACTACTAATAGTAACACCGAGACGAATTCTATTCAAGATGATGGAATTTCCATGATTTTTTCTGATTGCAAAAACCGAAACTTATGGAACTTTAGTGCAGTTTCTTCTGCTGAATCTGAGAGTACTAATGCATCCATTATTAGTGCTAGAAACAAAGACATGAAGTATCCATTCAAGGAACTCGATGAAACACTATCACAAACTTCCTCAGATCAAGGTAAAATCATTGAAAATTCCAAGGTTTATTCGACAAAAAGGACTAATATTGATCGATATGATCCTTACTTTAGTATTACTACTACTCAGAATTCTTCTTCTACTTCTACTGAATTTGGTTTCAAGCTTATCTCAGAGAAACCATCGAAATCGAAGAAACCAAGATGGGAAGATGATAATAAGAAGTGTCCTGGTTCATCAAATATCAATTTCCAGCAACCAAATTCATCGCTTTCATTGTCAAATTCATCGATTCACGAAGAGCCTGATCCAGAAGCTATAGCACAAATGAAGGAAATGATATATAGAGCTGCAGCATTTAGGCCAGTGGTGAATTTGGGTTTGGAAGTGATGGAAAAGCCTAAGAGAAAGAATGTTAAGATATCAAAAGACCCACAAACTGTGGCTGCAAGACAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTTCCTGGTGGAACCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCAAATTACCTCAAGTTTCTTAGGTCACAAGTCAAAGCATTAGAGAATCTAGGAAACAAGATTGATACTATGAATAATTGTCCTTCTTCAAGCATAGCCTTCTCATTCAACCCTTCAATTCCCATGCAAAACCCTAATGACCATATCCAATATTCCTAA 1218 0.3744 MENLSWDEDSQFVANIPILWNTQPQDLEREYSMSNPSSTFLSYQMQEMQKVQSGAGISWEESLIFQSYPSLSVNINTPNNYVPDCNMVHQQISKSTTTSSLESSLECLLSATTNSNTETNSIQDDGISMIFSDCKNRNLWNFSAVSSAESESTNASIISARNKDMKYPFKELDETLSQTSSDQGKIIENSKVYSTKRTNIDRYDPYFSITTTQNSSSTSTEFGFKLISEKPSKSKKPRWEDDNKKCPGSSNINFQQPNSSLSLSNSSIHEEPDPEAIAQMKEMIYRAAAFRPVVNLGLEVMEKPKRKNVKISKDPQTVAARQRRERISERIRVLQKIVPGGTKMDTASMLDEAANYLKFLRSQVKALENLGNKIDTMNNCPSSSIAFSFNPSIPMQNPNDHIQYS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g08002 405 FunFam BHLH transcription factor 314 378 - -
Vivi2g08002 405 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 315 371 IPR036638 GO:0046983
Vivi2g08002 405 MobiDBLite consensus disorder prediction 231 271 - -
Vivi2g08002 405 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 311 360 IPR011598 GO:0046983
Vivi2g08002 405 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 113 401 IPR045843 GO:0003700|GO:0006355
Vivi2g08002 405 Pfam Helix-loop-helix DNA-binding domain 321 360 IPR011598 GO:0046983
Vivi2g08002 405 SMART finulus 317 366 IPR011598 GO:0046983
Vivi2g08002 405 MobiDBLite consensus disorder prediction 246 269 - -
Vivi2g08002 405 Coils Coil 350 370 - -
Vivi2g08002 405 MobiDBLite consensus disorder prediction 231 245 - -
Vivi2g08002 405 Gene3D - 311 380 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g08002 Vivi-Chr2 230027608 230029412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g08002 67 399 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 53.079 2.37e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g08002 HLH 4.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g08002 - - gmx:100778004 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g08002 2 230027608 230029412 Vivi2g08002 2 230027608 230029412 ECH
Vivi2g08002 2 230027608 230029412 Vivi7g03760 7 103566852 103568997 PCT