Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07982 ATGCATGAAATGTCAAGAAACGAGAGAGAATCTTCAGAGGAAAGAAAGCTGGAACTAAGGCTTGCTCCACCTGGTGTTGAAAACTGGTTTCACACCAACAACAACAACAAACAAAGAGATCTTGATTTTGATTCAAACCATAAACTCTCTCTTGGTAGTAGTAACTACTTTTCAACAAACAATACATCATCATTTCTTCACTTTCCATCAACCCAACAACATGTGAGAGGCAAAGAATCTTCATCATCACAAGCCTGTTGTCCTAAGCTTGTAGACTTAGAGAATGGTGGTAATAACAAAGTTACAGCTGTTTCCAACACTTCTCAGAAAAGAACTGCTCCTGGACCAGTAGTAGGTTGGCCACCTATAAGGTCATTCAGGAAGAATCTTGCAACAAGCAGCATTTCTAAACCAACATCACAAACTGAATCTCAGACTCAACATCATCAAAACAAGGTTGTTGCTGGTAAAAAACCTATTGACAATAACTATGGTGGTAAAGGTTTGTTTGTTAAAATCAACATGGATGGTGTTCCTATTGGTAGAAAAGTTGATCTTAAAGCTTATCATAGCTATGAAAATCTCTCCATAGCTGTTGATGAACTCTTTAGAGGACTCCTTAAAGCTCAAGGAGATTCTTCTGGTTGTGGAAGCAAGAAAAATGAAGATGAAGAAAAAGTGATTAGTGGAATATTGGATGGAAGTGGAGAATATACTCTTGTATATGAGGATAATGAAGGAGACAGGATGCTTGTTGGTGATGTCCCATGGCATATGTTTGTATCAACAGTGAAGAGGCTTCGAGTGTTGAAGAGTACAGAGCTTTCTGCATTTACACTTGGGGCAAAGCAAGAGAAGATATGTACTTGA 870 0.3828 MHEMSRNERESSEERKLELRLAPPGVENWFHTNNNNKQRDLDFDSNHKLSLGSSNYFSTNNTSSFLHFPSTQQHVRGKESSSSQACCPKLVDLENGGNNKVTAVSNTSQKRTAPGPVVGWPPIRSFRKNLATSSISKPTSQTESQTQHHQNKVVAGKKPIDNNYGGKGLFVKINMDGVPIGRKVDLKAYHSYENLSIAVDELFRGLLKAQGDSSGCGSKKNEDEEKVISGILDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSTELSAFTLGAKQEKICT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07982 289 SUPERFAMILY CAD & PB1 domains 163 269 - -
Vivi2g07982 289 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 275 IPR003311 GO:0005634|GO:0006355
Vivi2g07982 289 FunFam Auxin-responsive protein 164 284 - -
Vivi2g07982 289 MobiDBLite consensus disorder prediction 133 152 - -
Vivi2g07982 289 ProSiteProfiles PB1 domain profile. 168 272 IPR000270 GO:0005515
Vivi2g07982 289 MobiDBLite consensus disorder prediction 133 153 - -
Vivi2g07982 289 Gene3D - 164 284 - -
Vivi2g07982 289 Pfam AUX/IAA family 17 276 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07982 Vivi-Chr2 229768646 229771144 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07982 172 281 B3 DNA Binding Superfamily AT4G23980 33.636 4.88e-13 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi2g07982 AUX_IAA 1.1e-69 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07982 K14484 - gmx:100804593 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g03800 7 103887802 103890113 Vivi2g07982 2 229768646 229771144 ECH
Vivi2g07982 2 229768646 229771144 Vivi2g07982 2 229768646 229771144 ECH
Vivi2g07982 2 229768646 229771144 Vivi7g03800 7 103887802 103890113 PCT