Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07972 ATGACTCGGCGGTGCTCTCACTGCAGTAACAACGGTCATAACTCTCGGACATGTCCGTCGAGAGGCGGAGGTAGCGGCGGCGGCGGGGTTAGGCTTTTTGGTGTTAGATTGACGGATGGATCGATTATTAAAAAGAGTGCGAGTATGGGGAATTTAACGCTTGCGAATCATCATCATTGTTCTTCTCCTTCTTCGGTTCATCCCGGTTCGATTGTTAACCCCGGTTCACCGTGTTCTGACCCGCCCAATGAACCGGAAGGTTATTTGTCTGATGATCCTGCTAATGTTTCCAGCTTCGCTATCCGCCGCAGCGACAGAAAGAAAGGTGTTCCATGGACTGAAGAAGAACACCGGATGTTCTTGGTTGGACTCCATAAACTAGGCAAAGGAGACTGGCGTGGGATAGCACGTAATTATGTTGTGTCAAGGACCCCTACTCAAGTAGCAAGTCATGCACAAAAGTACTTCATCCGTCAGAGTAATGCTACCAGGAGAAAGAGACGTACGAGTCTTTTCGACATGGCTCCTGATATGTATCCAGATTCAACTTCAATGCCAGAAGAACAAGTACTACTTCCACCTTCTGAGAACTCACAACCTTGCAATGGAAAATCACATCCGTCACTAAATCTCTCTCTCAAGTCAGAATATGAACCAATGGAAACTACATCTGAAGAAAACGTTGAAGAGGGCAACGAAAATCCTATGGGATCGAATAGATTGACACCAATGACTCACGGATTCTTTCCATCTTATATACCCGTCTCATTTTCCATGTGGCCGGCAATTGGAGCTCCCTTTGAAGTATCCAACGGTGGAGAGACATCTCATCATAGTCATCATCAGGTTCTCAAGCCGATACCGGTCATTCCTAAGGAACCCGTCAACGTTGATGAACTCGTGGGGATGTCTCATTTGAGCATCGGGGAAACACAAGTGCGTGATAGAGAGCCTCCCCCTCTTTCCTTGAATTTGTTAGGAGAGCCCTCAAGACAATCAGCATTCCACGCAAATACTCCGGTTGGTGGCTCTGATCTAAACAGTGGCAAAAACAACGCCATTCAAGCGGTTTGA 1074 0.4702 MTRRCSHCSNNGHNSRTCPSRGGGSGGGGVRLFGVRLTDGSIIKKSASMGNLTLANHHHCSSPSSVHPGSIVNPGSPCSDPPNEPEGYLSDDPANVSSFAIRRSDRKKGVPWTEEEHRMFLVGLHKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQSNATRRKRRTSLFDMAPDMYPDSTSMPEEQVLLPPSENSQPCNGKSHPSLNLSLKSEYEPMETTSEENVEEGNENPMGSNRLTPMTHGFFPSYIPVSFSMWPAIGAPFEVSNGGETSHHSHHQVLKPIPVIPKEPVNVDELVGMSHLSIGETQVRDREPPPLSLNLLGEPSRQSAFHANTPVGGSDLNSGKNNAIQAV 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07972 357 SUPERFAMILY Homeodomain-like 106 161 IPR009057 -
Vivi2g07972 357 MobiDBLite consensus disorder prediction 188 218 - -
Vivi2g07972 357 Gene3D - 110 161 - -
Vivi2g07972 357 ProSiteProfiles Myb-like domain profile. 104 156 IPR001005 -
Vivi2g07972 357 ProSiteProfiles SANT domain profile. 112 160 IPR017884 -
Vivi2g07972 357 MobiDBLite consensus disorder prediction 58 72 - -
Vivi2g07972 357 MobiDBLite consensus disorder prediction 177 240 - -
Vivi2g07972 357 MobiDBLite consensus disorder prediction 327 357 - -
Vivi2g07972 357 MobiDBLite consensus disorder prediction 1 21 - -
Vivi2g07972 357 CDD SANT 111 156 IPR001005 -
Vivi2g07972 357 FunFam transcription factor MYB1R1 110 161 - -
Vivi2g07972 357 MobiDBLite consensus disorder prediction 58 96 - -
Vivi2g07972 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 160 IPR017930 -
Vivi2g07972 357 SMART sant 108 158 IPR001005 -
Vivi2g07972 357 NCBIfam myb-like DNA-binding domain, SHAQKYF class 107 159 IPR006447 GO:0003677
Vivi2g07972 357 PANTHER TRANSCRIPTION FACTOR KUA1 3 289 - -
Vivi2g07972 357 MobiDBLite consensus disorder prediction 1 25 - -
Vivi2g07972 357 Pfam Myb-like DNA-binding domain 111 156 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07972 Vivi-Chr2 229600632 229603867 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi2g07972 Myb_DNA-binding 2.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07972 - - gmx:778036 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07972 2 229600632 229603867 Vivi2g07972 2 229600632 229603867 ECH