Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07928 ATGTCTACGCCATTACAACATGATGATGAGACTTCATCTCTCAACTTCAAGGAGACAGAACTCAGACTAGGCCTACCTGGTTCTCAATCTCCTCAAAGAAAACCAGTTGGAGGAGTTTCTCTTAACTTCAACAACAACATTAGTGTTTGTTCTTCTTTGAACAACCTTGTATCTAGTGTTGGAGCTAAAAGAGGTTTCTTTGATGCTATTGATGAATCTTCACCAAAAAACATCAAAGAGGTTCTTCACCAACCAATACATGAAAAGAATAAACATGTTTCTGGAACAAATGAACATGCTAATGTTCTTGCTTCAAAGACACAGGTTGTAGGATGGCCACCAATCCGATCTTTTCGAAAGAACTCGATGGCTTCGAATTTGACAAAGAACAATGATGAAGATGAAGGAAAACCAGGATCTGATTGTCTTTATGTGAAAGTGAGTATGGATGGTGCACCTTATCTCAGAAAGATTGATATCAAAATCTATAACAACTATAAGGATCTTTCTTCAGCTCTTGAGAAGATGTTTACATGCTTTACCATTGGTCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGACTCAGTGAGAGCTCTTTGAGGGATCTTCTTGATGGATCTGAATATGTTCTTACATATGAAGATAAAGATGGAGATTGGATGCTTGTCGGCGATGTTCCTTGGCGGATGTTCGCCGACTCGTGTCGGAGACTAAGGATCATGAAAGGCTCTGAGGCAATTGGGCTAGCTCCAAGAGCCATGGAAAAATCTAGGAGCCAAAAGTAA 789 0.4005 MSTPLQHDDETSSLNFKETELRLGLPGSQSPQRKPVGGVSLNFNNNISVCSSLNNLVSSVGAKRGFFDAIDESSPKNIKEVLHQPIHEKNKHVSGTNEHANVLASKTQVVGWPPIRSFRKNSMASNLTKNNDEDEGKPGSDCLYVKVSMDGAPYLRKIDIKIYNNYKDLSSALEKMFTCFTIGQCNSPGLPGKDGLSESSLRDLLDGSEYVLTYEDKDGDWMLVGDVPWRMFADSCRRLRIMKGSEAIGLAPRAMEKSRSQK 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07928 262 SUPERFAMILY CAD & PB1 domains 140 243 - -
Vivi2g07928 262 Gene3D - 137 256 - -
Vivi2g07928 262 ProSiteProfiles PB1 domain profile. 142 244 IPR000270 GO:0005515
Vivi2g07928 262 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 14 249 IPR003311 GO:0005634|GO:0006355
Vivi2g07928 262 Pfam AUX/IAA family 18 253 IPR033389 -
Vivi2g07928 262 FunFam Auxin-responsive protein 137 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07928 Vivi-Chr2 228821386 228822973 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07928 144 256 B3 DNA Binding Superfamily AT1G19850 30.973 1.67e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vivi2g07928 AUX_IAA 2.4e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07928 K14484 - gmx:100804423 353.599