Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07927 ATGATGGCTGGAAACCCTAACTGGTGGAACATGCATCCACAATCTTTGAATATTCCTCAATATATGCTTGGATCTTCTTCAATCCCTTTTAATTCCTTGACAGAAAATGCTGAAGTTCCTCCTCAATCATGGAGTCAACTACTTTTTACTGGACTACCTGGAGAAGAAGAGAGGCTAGGTTTCGACCATTTTCAACCTAAAAACACAGAAAACTGGGATGTACAAATTCTGAATCCATCTTCAAGAGTTCCTATTATGGATGTAATAAAGCATGAAGTTTCTCAGAGTGAGAATTTCTATAACCAAGGGCATCGTCATGAGGAGTTTCATACTTCTGGACTTGGTTCATCTTGGTCACACATGGTGCCAGTTTCTTCTCCAACTTCTCATGTCACTACTAGCTTAAGTAATGATAACATATTGGATTTCACTTATAACAAGCTAGATCATAGCAAAAATCAACTACCAGATCAAATATCTGAGAGTAATAGTTCAACGGTTGGAGTTAATAAGAAGGCTAGGGTTCAGCCATCTTCAAGCCAACCACCTCTAAAGGTGAGGAAGGAGAAGCTAGGTGATAGAATAACAGCACTTCACCAACTAGTTTCTCCATTTGGAAAGACTGACACAGCTTCTGTATTATTAGAAGCCATTGGATACATCAGATTTCTGCAGAGTCAAATTGAGGCACTAAGCTCTCCTTACTTGGATACTGCAGCTTCAAAAAACATGATGAGGAATCAACATTCTGTGCATGTTGAAAGAAATGCTGTGTTTCCTGAGGACCCTGGTCAGCTGTTGGATGACACTGGCCTAAAAAGAAAGGGTGCTCCAATTCCAAACCAGAATGTAGAAGGTAATAAGGCAAGGGACTTGAGGAGTAGAGGGTTGTGTTTGGTTCCAATTTCATGCACACAACATGTTGGAAGTGAAAATGGAGCTGATTATTGGGCACCAGCATTTGGAAGTGGATTTTAA 978 0.4008 MMAGNPNWWNMHPQSLNIPQYMLGSSSIPFNSLTENAEVPPQSWSQLLFTGLPGEEERLGFDHFQPKNTENWDVQILNPSSRVPIMDVIKHEVSQSENFYNQGHRHEEFHTSGLGSSWSHMVPVSSPTSHVTTSLSNDNILDFTYNKLDHSKNQLPDQISESNSSTVGVNKKARVQPSSSQPPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSSPYLDTAASKNMMRNQHSVHVERNAVFPEDPGQLLDDTGLKRKGAPIPNQNVEGNKARDLRSRGLCLVPISCTQHVGSENGADYWAPAFGSGF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07927 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 236 IPR036638 GO:0046983
Vivi2g07927 325 Gene3D - 185 251 IPR036638 GO:0046983
Vivi2g07927 325 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 40 307 - -
Vivi2g07927 325 MobiDBLite consensus disorder prediction 153 183 - -
Vivi2g07927 325 MobiDBLite consensus disorder prediction 153 184 - -
Vivi2g07927 325 FunFam Transcription factor bHLH123 family 185 249 - -
Vivi2g07927 325 CDD bHLH_AtbHLH_like 185 232 IPR045239 -
Vivi2g07927 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07927 Vivi-Chr2 228776430 228780112 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07927 1 266 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 39.222 7.22e-44 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07927 - - gmx:100802121 445.662