Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07913 ATGGCTGCTACTTCTAATAAACCCTCTGCCGCTTCACAAGAGAACACCATCAACAACAAAGTTTCAATATTCATGAAAGAGAAGAATATTTCAAACTCCGAAATCTCAACCTTCAAGCTCTCTGAGGATGCGTCCGTTCACGTGTCGAAGTTGAAAGAACATGATTTTTTCAACCATGCAAAGAATCCGGCGATAGGTTCATCTTCATTAAGTTTGGCTAATAATAAGTCTAACAATGCCGAAAATATTAAAAAAGAGTCTTCAAACAATTTTTCATGCAACTTTTGTAAAAGACAGTTTTCTACTCCGCAAGCTTTAGGAGGACATCAAAACGCCCATAAAAAAGAGCGCGAACTCGCAAAACATCGCCAAGAGGTAAATAATAATTTTGGAATTCCTCGTTATCCTTTTCCTTACTACACTAATTATCCTAGTCTTTCTACAACTCTTTATCAAGGATTTAGATTTGGACCTTATAATAGAGCACTTGGAATTAATAAGGGTTCTATGATTCACAAGCCAAGGCCAAATTATTCATGGACCTCACCTCTTTTTAAGTCATGTTCTTCTTCTGTGTGGACACCAAAGCAAGAGTTGAGAAACTTTTTTGCTATTGATGGGTTGAAGAGTGAGAGCCTTGATGTAAATAATGGAAATAATATTGTGGCTCCAACTTTAAGAAATATGCTAAATTTAGAAGATGATATTGGAAAGTCTTCTATAAATATTGCAGTGAAGTCAAACTCAGTGGAACTGGATTCAATTAGAATTGGCACAAGTGGTGATAATCATGGTACTAACAAAGAAGAAGTCTCTGATTCTAAATCTTTTGAGCTTGATTTGTCACTTAAGCTTTAA 858 0.3555 MAATSNKPSAASQENTINNKVSIFMKEKNISNSEISTFKLSEDASVHVSKLKEHDFFNHAKNPAIGSSSLSLANNKSNNAENIKKESSNNFSCNFCKRQFSTPQALGGHQNAHKKERELAKHRQEVNNNFGIPRYPFPYYTNYPSLSTTLYQGFRFGPYNRALGINKGSMIHKPRPNYSWTSPLFKSCSSSVWTPKQELRNFFAIDGLKSESLDVNNGNNIVAPTLRNMLNLEDDIGKSSINIAVKSNSVELDSIRIGTSGDNHGTNKEEVSDSKSFELDLSLKL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07913 285 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Vivi2g07913 285 Gene3D Classic Zinc Finger 67 131 - -
Vivi2g07913 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Vivi2g07913 285 SUPERFAMILY beta-beta-alpha zinc fingers 89 118 IPR036236 -
Vivi2g07913 285 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 14 285 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07913 Vivi-Chr2 228466152 228467009 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07913 91 285 C2H2 Transcription Factor Family AT5G10970 33.166 2.91e-15 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi2g07913 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07913 - - vvo:131605513 302.367