Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07912 ATGGCTGCACCCTCTGATCAATCCTCTGCCACTTCTGAAGAGAGCACCATCAACAACAAGATGATGACAATGAAAGAGAAGGAAATTGTAAAATCTGAACATCAGTTTTCAATCTTCAATTCTCAGTTGCTCCCTGAGGATAATTTGGTTCGTAGGTCGAAGGTACAAGAATATGATTTTTTAAGCCCCTCTAAGAACATGGTTGCGAGTTCATCTTCATCGAGTTTAGATAATCAGTTCAACAATAAAAATAAGAATGAGAAAAAGTCTTCCAATATTTTTTCTTGCAAATTTTGTAAAAGAAAATTTTCTACTCCGCAATCTTTAGGAGGACACCAAAATGCTCACAAGGAAGAGCGTGCACTTGCAAAACATCACAAAGAGATATTTAATTGTATTGAAAGTCATCGTCACCTGATTCCTCACTATACTAATTATCCTCGTCATTATACAATCCCTTTTAATGGGTTTAGATTTGGCTCCTATAATAGAGCACTTGGAATTAATATGGGTTCTATGATTCACAAGCCAAGGCCAAATTATTCATGGACCTCACCTCTTTCTAAGTCATGTTCTACTTCTGTGTGGACAGCAAAGCAAGAGATGAGAGACTTTTTTTCTATTGAAGGATTGAAGAATGATAGTGTTACGGTAAATAATGGAAATAATGTCACTCCTATTTTAAGAAATTTGCTAAATTTAGAAGAAAATGTTGGAAAGTCTTCAATACATATTGCTACAAAGTCAAACTCAACGGAAAAGAATTCAATTGTAGCAGGCACGAGTGGTGATAATCATCATAGTAATATTGAAGATGCCTCTGATTCAGAATCTCTTGAGCTTGATTTGTCGCTTAAGCTTTAA 864 0.353 MAAPSDQSSATSEESTINNKMMTMKEKEIVKSEHQFSIFNSQLLPEDNLVRRSKVQEYDFLSPSKNMVASSSSSSLDNQFNNKNKNEKKSSNIFSCKFCKRKFSTPQSLGGHQNAHKEERALAKHHKEIFNCIESHRHLIPHYTNYPRHYTIPFNGFRFGSYNRALGINMGSMIHKPRPNYSWTSPLSKSCSTSVWTAKQEMRDFFSIEGLKNDSVTVNNGNNVTPILRNLLNLEENVGKSSIHIATKSNSTEKNSIVAGTSGDNHHSNIEDASDSESLELDLSLKL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07912 287 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Vivi2g07912 287 MobiDBLite consensus disorder prediction 65 86 - -
Vivi2g07912 287 MobiDBLite consensus disorder prediction 1 20 - -
Vivi2g07912 287 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 8 287 IPR044246 GO:0009788
Vivi2g07912 287 MobiDBLite consensus disorder prediction 253 275 - -
Vivi2g07912 287 Gene3D Classic Zinc Finger 69 140 - -
Vivi2g07912 287 SUPERFAMILY beta-beta-alpha zinc fingers 92 121 IPR036236 -
Vivi2g07912 287 MobiDBLite consensus disorder prediction 1 19 - -
Vivi2g07912 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Vivi2g07912 287 MobiDBLite consensus disorder prediction 253 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07912 Vivi-Chr2 228426988 228427851 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07912 80 129 C2H2 Transcription Factor Family AT5G01860 56.000 1.23e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi2g07912 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07912 - - vvo:131605513 261.151