Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07897 ATGGGTAAGGGAACTGGAAGTTTCGGTAAGAGGAGGAACAAGACCCACACTCTCTGTGTCAGGTGCGGCCGCCGCAGTTTCCACCTTCAGAAGAGTCGGTGCTCGGCGTGTGCTTACCCAGCTGCTCGCGTCAGGAAATATAACTGGAGTGTTAAGGCAATCCGTAGAAAGACCACTGGAACTGGTAGGATGAGGTACTTGCGCAATGTTCCTCGCCGTTTCAAGAGTGGCTTCAGAGAGGGAACTGAAGCTGCACCTAGGAAGAAGGGAGCTGTGGCTGCTTAG 285 0.5368 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRNVPRRFKSGFREGTEAAPRKKGAVAA 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07897 94 Gene3D - 1 87 IPR011331 GO:0003735|GO:0005840|GO:0006412
Vivi2g07897 94 FunFam Ribosomal protein L37 1 88 - -
Vivi2g07897 94 Hamap 50S ribosomal protein L37e [rpl37e]. 2 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Vivi2g07897 94 PANTHER 60S RIBOSOMAL PROTEIN L37 1 92 - -
Vivi2g07897 94 ProSitePatterns Ribosomal protein L37e signature. 4 23 IPR018267 GO:0003735|GO:0005840|GO:0006412
Vivi2g07897 94 SUPERFAMILY Zn-binding ribosomal proteins 1 55 IPR011332 GO:0006412
Vivi2g07897 94 Pfam Ribosomal protein L37e 3 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07897 Vivi-Chr2 228140533 228141596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07897 1 94 Cytoplasmic Ribosomal Protein Gene Family AT1G52300 87.234 3.17e-57 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07897 K02922 - gmx:100527725 192.586