Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07880 ATGGAATCTTGGACAGAATATGTTATGAAGAACAATGTGGGGAGAGAGTTTGTAGCAGGTGGATTTGGAGGCACAACAGGTATCATAGCGAGTTATCCATTGGATACTCTTCGTGTCATGCAACAACAGTCCGGGAAGGCTTCTGCTGTTGGCATCCTTAGAAACTTGTTGGCCAAGGAAGGACCTTCTGCTCTTTATCGTGGCATGGCAGTTCCTTTGGCTTCTGTTGGTTTTCAGAATGCTATGATTTTTCAAAGTTATTCCATTTTTACGAGGATTTGTAGTCCTTCTATTTCATCTAATGGACCTCCTTCCCTTGTGAATGTTGCTTTGGGAGGACTCGGTGCAGGTGCTATCCAAAGCATGTTGATGTCTCCTGTTGAGTTAGTTAAAATTCGCATTCAGCTTCAAAAAAATATTGACAATTGTTCAGAAAACAAAAAGAACACTCCTTTGATCTTAGCTAAGAACATTTGGAAAAATGAAGGCCTTTGTGGCATTTATCGAGGATTTGGTATCACAGTTCTTAGAGATGCACCTGCTCTTGCCTTCTACTTTGGAGCATATGAGTACACAAGGGAGAAACTCCACCCTGGTTGTAGAGGAAGTTGTCAAGAAAGTGTGCATACTATGTTTATAGCAGGAGGAGTAGCAGGGATAGCGAGTTGGATTTTTAACTATCCTGCAGATGTTATAAAGACTAGATTGCAAGCTCAAACATCATCTTCATTGAAATACAAAGGTATATTGGATTGCACCTTAAAGATAATCAAAGAAGAAGGTTTGATTGTGCTATGGAGGGGTTTAGGAGCAACACTTGCTCGAGCATTTATTATGAATAGTACTATATTTCCAACTTATCAAGTCACTTTAAGGTGTTTGACCAACAATTAA 894 0.3971 MESWTEYVMKNNVGREFVAGGFGGTTGIIASYPLDTLRVMQQQSGKASAVGILRNLLAKEGPSALYRGMAVPLASVGFQNAMIFQSYSIFTRICSPSISSNGPPSLVNVALGGLGAGAIQSMLMSPVELVKIRIQLQKNIDNCSENKKNTPLILAKNIWKNEGLCGIYRGFGITVLRDAPALAFYFGAYEYTREKLHPGCRGSCQESVHTMFIAGGVAGIASWIFNYPADVIKTRLQAQTSSSLKYKGILDCTLKIIKEEGLIVLWRGLGATLARAFIMNSTIFPTYQVTLRCLTNN 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07880 297 Gene3D Mitochondrial carrier domain 7 296 IPR023395 -
Vivi2g07880 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 206 293 IPR018108 -
Vivi2g07880 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 93 IPR018108 -
Vivi2g07880 297 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 12 294 - -
Vivi2g07880 297 PRINTS Mitochondrial carrier protein signature 215 237 IPR002067 GO:0055085
Vivi2g07880 297 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085
Vivi2g07880 297 PRINTS Mitochondrial carrier protein signature 168 186 IPR002067 GO:0055085
Vivi2g07880 297 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Vivi2g07880 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 195 IPR018108 -
Vivi2g07880 297 Pfam Mitochondrial carrier protein 207 296 IPR018108 -
Vivi2g07880 297 Pfam Mitochondrial carrier protein 12 93 IPR018108 -
Vivi2g07880 297 Pfam Mitochondrial carrier protein 105 196 IPR018108 -
Vivi2g07880 297 SUPERFAMILY Mitochondrial carrier 13 287 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07880 Vivi-Chr2 227806325 227809329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07880 1 297 Antiporters AT1G79900 57.718 1.47e-109 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07880 K15109 - gmx:100801221 375.941