Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07846 ATGAATATTCAGGAGGAGACTCAGCTCACTCTTGCTCTTCCTGGTTCCACCAAATCAACCACACCTGCTTCAGCCACAAAACGTGCCTTCTCCACTACTACACTTGATCTTCATCTTGCCACCAAACATGTGGTGGGATGGCCGCCGGTGAGAGGAAACAGAAAGAATATTGCCATGAAAAGTTGCAAGTACGTCAAAGTTGCGGTTGATGGAGCTCCGTATCTAAGAAAAGTCGATCTCGAAATTTATGACGGTTATGAGAATCTTCTGAGGGCAGTGGATAGCATGTTTGTCGGTACTAATTTAATGAGTGAGAAGAAATTCATGCTTACCTATGAGGATAAAGATGGTGACTGGATGTTGCTTGGAGATGTACCTTGGAAAATGTTTGTTGAATCATGCAAGAGAATAAGGCTTATGATTAGCATGGAGGATAGTACTAGTTGCAGTTCCAGATGTACGGGCTCCAGTGAGAAGAATAATTAG 486 0.43 MNIQEETQLTLALPGSTKSTTPASATKRAFSTTTLDLHLATKHVVGWPPVRGNRKNIAMKSCKYVKVAVDGAPYLRKVDLEIYDGYENLLRAVDSMFVGTNLMSEKKFMLTYEDKDGDWMLLGDVPWKMFVESCKRIRLMISMEDSTSCSSRCTGSSEKNN 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07846 161 SUPERFAMILY CAD & PB1 domains 53 141 - -
Vivi2g07846 161 ProSiteProfiles PB1 domain profile. 62 146 IPR000270 GO:0005515
Vivi2g07846 161 Gene3D - 56 154 - -
Vivi2g07846 161 Pfam AUX/IAA family 60 98 IPR033389 -
Vivi2g07846 161 Pfam AUX/IAA family 100 144 IPR033389 -
Vivi2g07846 161 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 5 144 IPR003311 GO:0005634|GO:0006355
Vivi2g07846 161 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07846 Vivi-Chr2 227095734 227096590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07846 49 137 B3 DNA Binding Superfamily AT4G23980 32.979 1.08e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi2g07846 AUX_IAA 2.5e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07846 K14484 - gmx:100500488 169.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07846 2 227095734 227096590 Vivi2g07846 2 227095734 227096590 ECH
Vivi5g00337 5 4495430 4501878 Vivi2g07846 2 227095734 227096590 PCT