Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07823 ATGGAAGGAAAGTACACTGAATTCTCACAGCATTTGAAGAAACCTAGAATTTCAGAAGAAAGCAATTCGAGAATCAAAACTGAACTTTGCAGAAGATTCATGCATGGTCTTTGTGCTCATGGTGACAAATGCAACTACGCTCATGGCTACTCTGAACTCAGAACTGCCCCCAAACTATGCAGAATGTTCATGTACAACAGACACTGTACCTATGGTAACACTTGTCGTTACCTTCATTCAGCAGTTCCTCTTCATCATCATCATGATCATGGTGGTCATCATTCTCAAATCAATGTCTCTTCTGCTGCAAAACCAGAACTAGGGACAGTGCAGAATGCAAAACCAGGGACAAAGGAGAATGCAGGAAGCAAGATCATGCAAACTAGTGCTGCTGCTGCTACAACTGGTGGCCACACTTCTGCACAAAACAACATAGTGCCAACTTCTAGTTCTGCTCCTGCTACAAATGCCTCAACTAGCCCAGCTGCGGCAACTACCTCTTTCCATAAGAATGGACCTTATGCCTGTAAAACCATAATCGACGAAAAGAAACTGCAAAGGGTAAGCCGCATCTATGGTGATTGGATTTAA 591 0.4315 MEGKYTEFSQHLKKPRISEESNSRIKTELCRRFMHGLCAHGDKCNYAHGYSELRTAPKLCRMFMYNRHCTYGNTCRYLHSAVPLHHHHDHGGHHSQINVSSAAKPELGTVQNAKPGTKENAGSKIMQTSAAAATTGGHTSAQNNIVPTSSSAPATNASTSPAAATTSFHKNGPYACKTIIDEKKLQRVSRIYGDWI 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07823 196 MobiDBLite consensus disorder prediction 1 21 - -
Vivi2g07823 196 MobiDBLite consensus disorder prediction 129 167 - -
Vivi2g07823 196 PANTHER CCCH ZINC FINGER/TIS11-RELATED 15 148 IPR045877 GO:0003729
Vivi2g07823 196 SMART c3hfinal6 24 50 IPR000571 GO:0046872
Vivi2g07823 196 SMART c3hfinal6 56 81 IPR000571 GO:0046872
Vivi2g07823 196 Gene3D - 18 56 - -
Vivi2g07823 196 Gene3D - 57 86 - -
Vivi2g07823 196 ProSiteProfiles Zinc finger C3H1-type profile. 24 51 IPR000571 GO:0046872
Vivi2g07823 196 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 26 49 IPR000571 GO:0046872
Vivi2g07823 196 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 58 80 IPR000571 GO:0046872
Vivi2g07823 196 FunFam zinc finger CCCH domain-containing protein 15-like 18 56 - -
Vivi2g07823 196 ProSiteProfiles Zinc finger C3H1-type profile. 54 82 IPR000571 GO:0046872
Vivi2g07823 196 SUPERFAMILY CCCH zinc finger 23 55 IPR036855 GO:0046872
Vivi2g07823 196 SUPERFAMILY CCCH zinc finger 57 81 IPR036855 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07823 26 80 C3H Transcription Factor Family AT1G68200 39.683 1.23e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi2g07823 zf-CCCH 0.00028 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07823 - K15308 psat:127087552 312.383