Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07771 ATGGAGGAGAATCTATGGGGGAATTGCTCTTACGATTTGGAAATGTATCATGAAGTCACAGAAAGTTTGTGTAACACCAACAACTCATTTGAGGAAGAGTTCCTAAGAGATATCTTCCCTCAGACACCACAAGATCTATTCACGAGTCTTCCTATTGCCAACAACGACTCATCCATCAATGTCGTCTCTCATTCAACTGATCAACATGTTGCAGAAAAGCCATCATCTTGTATTCTTTCTTTTGACAAATCCACTGTATTGTTGCCACCAACTCAACAGCATAAAGATCCTTTGAAACATTCGAGGAATCGTCGAAGAAGCCCTACTGCTTCACTTGATCACATAATGTCCGAGAGAAAAAGGCGAAAGGAAATTACAATGAAGTTTATAGAACTTTCAGCCCTTTTACCTGGATTGAAGAAGACGGATAAGGGTTATGTACTAAGAGAAGCTATCAATCACGTGAAACAACTTGAAAGACGTGTGAAAGAGTTGGAACAAGACATCAAGAAGAGAGACATGGAATCTGTTACCAACGATGTTGCAATAGGCGAAAAGAACACCGAAGAATCTTATGAGTGCAACCAATCACTTCCACAAGTTGAAGCAGTAGTCCTAGGGAAGGAAGTGTTGATTAGGGTTTATTGTGTGAGGCAAAAAGGGATTGTGGTTGATATAATGTCTCAGCTTCAACTTCATCATCTCTCCATAACTACTTCCAATATCTTGCCATTTAGAAATACTCTTAGCATCAACATTGTTGCTCAGATGGATGGTGATTGCAACTTGATAGTGAAAGCTCTAGTGAAAAAACTAAGACTAGTGGCTAAGTTACAGACATATTTTCCTAATAGCATCTTTAATGGTAGCAACCAATTTGGATCCTCAGCAGCCAAGAATGTGGCAGCCATTTGTGCAGCACATTATTGGCCATTAGATTCATCAATGGATCTATTTTCGTCGTACAAGAGTTCAGTTATCTTGGATATCGTCACAGAATGGATGCCAATGACATTTCGACCATCTCCGGCAATGTCCCTAAATGACATATGTGCTTGCACTGCCGCATACATTTTTATGAGTGACGAAGAAGATCGTTACGGCCGTGAGGTTTTGGTAAAAACAGCTTCAAATGTATATGGAGATCGGAAAACACTTAAGACCCTGATGCCAAGAAGCCCTTTAGACCAGAAGCAATATGCCCTGGAAGGACGTCACAATCCTGATTATGTGAGGGATATATACCAGACTCGTTTCATGACATCCAAATCTAGAGTGTTAAGGGCCATATTTCTTGAGGAGATTCTGTGTCACGAATCTTTTGTTGACATGATTCCAAATTATCCAACACATTCGATATCATCCTACCCCATAGAGGACCCAACATCCCTTAAACAACAACTTGCCGGATCAAATGATTGTGGAGTTTGGGTATGTAAGTGGATGATTGAGTGTCCCTTCCAAACTTTGTTTGAAGAAACCAATGTTATGACTTCAACTAGAATGAAACTCGCCCTTTTTTTGTTACACTCCGGTAATAATATTTTGTTACGCGAAATATTGACAAAGTCGGCGGCTTATTGGAAGAAGCAGGAAGATCTAAGGAAGAAGTTGGTAAAATTAGGTTGA 1629 0.399 MEENLWGNCSYDLEMYHEVTESLCNTNNSFEEEFLRDIFPQTPQDLFTSLPIANNDSSINVVSHSTDQHVAEKPSSCILSFDKSTVLLPPTQQHKDPLKHSRNRRRSPTASLDHIMSERKRRKEITMKFIELSALLPGLKKTDKGYVLREAINHVKQLERRVKELEQDIKKRDMESVTNDVAIGEKNTEESYECNQSLPQVEAVVLGKEVLIRVYCVRQKGIVVDIMSQLQLHHLSITTSNILPFRNTLSINIVAQMDGDCNLIVKALVKKLRLVAKLQTYFPNSIFNGSNQFGSSAAKNVAAICAAHYWPLDSSMDLFSSYKSSVILDIVTEWMPMTFRPSPAMSLNDICACTAAYIFMSDEEDRYGREVLVKTASNVYGDRKTLKTLMPRSPLDQKQYALEGRHNPDYVRDIYQTRFMTSKSRVLRAIFLEEILCHESFVDMIPNYPTHSISSYPIEDPTSLKQQLAGSNDCGVWVCKWMIECPFQTLFEETNVMTSTRMKLALFLLHSGNNILLREILTKSAAYWKKQEDLRKKLVKLG 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07771 542 CDD ACT 212 273 - -
Vivi2g07771 542 Pfam Helix-loop-helix DNA-binding domain 114 159 IPR011598 GO:0046983
Vivi2g07771 542 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 113 170 IPR036638 GO:0046983
Vivi2g07771 542 Coils Coil 148 175 - -
Vivi2g07771 542 Gene3D - 98 174 IPR036638 GO:0046983
Vivi2g07771 542 ProSiteProfiles ACT domain profile. 211 283 IPR002912 -
Vivi2g07771 542 SMART finulus 115 164 IPR011598 GO:0046983
Vivi2g07771 542 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 158 IPR011598 GO:0046983
Vivi2g07771 542 PANTHER BHLH TRANSCRIPTION FACTOR 34 276 - -
Vivi2g07771 542 MobiDBLite consensus disorder prediction 89 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07771 Vivi-Chr2 225562927 225573595 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07771 106 273 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.418 2.08e-33 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g07771 HLH 7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07771 - - vvo:131651486 1077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07771 2 225562927 225573595 Vivi5g00202 5 2436672 2438825 PCT
Vivi5g00203 5 2450544 2452446 Vivi2g07771 2 225562927 225573595 PCT