Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07770 ATGGAGGAGAATCCATGGGGGAATTGCTCTTACGATTTGGAAATGGATCATGAAGTCACAGAAAGTTTGTGTGACACCAACAACATATTTGAGGAAGAGTTCCTAAGAGATATCTTCCCTCAGACACCACAAGATCTATTCCCGAGTCTTCCTATTGCCAACAACAACTCATCCATCAATGTCGTCTCTCCTTCAACTGATCAACATGTTGCAGAAATGCCATCATCTTGTATTCTTTCTTTTGACAAATCCACTGTATTGTTGCCACCAACTCAACAACGTAATAATGACCCTTTGAAACATTCGAGGAATCGTCGAAGAAGCCCTACTGCGTCACTTGATCACATAATGGCCGAGAGAAAAAGGCGAAAGGAAATTACAATGAAGTTTATAGAACTTTCAGCCCTTTTACCTGGATTGAAGAAGACGGATAAGGGTTACGTACTAAGAGAAGCTATCAATCACGTGAAACAACTTGAAGAACGTGTGAAAGAATTAGAACAAGACATCAAGAAGAGAGATATGGAATCTGTTACCAACGATGTTGCAATAGGCGAAAAGAACAGCGAAGAATCTTATGAGTGCAACCAATCACTTCCACAAGTTGAAGCAATAGTCCTAGGGAAGGAAGTGTTGATTAGGGTTCATTGTGTGAGGCAAAAAGGGATTGTGGTTGATATAATGTCTCAGCTTCAACTTCATCATCTCTCCATAACTAGTTCCAATATCTTGCCATTTAGAAATACTCTTGGCATCAATATTGTTGCTCAGATGGATGATGATTGCAACTTGATAGTGAAAGCTCTAGTGAAAAAACTAAGATTAGTGGCTACGTTGCAGACATGTGATGATGTGCAACCGTGA 864 0.3993 MEENPWGNCSYDLEMDHEVTESLCDTNNIFEEEFLRDIFPQTPQDLFPSLPIANNNSSINVVSPSTDQHVAEMPSSCILSFDKSTVLLPPTQQRNNDPLKHSRNRRRSPTASLDHIMAERKRRKEITMKFIELSALLPGLKKTDKGYVLREAINHVKQLEERVKELEQDIKKRDMESVTNDVAIGEKNSEESYECNQSLPQVEAIVLGKEVLIRVHCVRQKGIVVDIMSQLQLHHLSITSSNILPFRNTLGINIVAQMDDDCNLIVKALVKKLRLVATLQTCDDVQP 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07770 287 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 172 IPR036638 GO:0046983
Vivi2g07770 287 ProSiteProfiles ACT domain profile. 212 284 IPR002912 -
Vivi2g07770 287 Gene3D - 96 175 IPR036638 GO:0046983
Vivi2g07770 287 SMART finulus 116 165 IPR011598 GO:0046983
Vivi2g07770 287 CDD ACT 213 274 - -
Vivi2g07770 287 MobiDBLite consensus disorder prediction 89 112 - -
Vivi2g07770 287 PANTHER BHLH TRANSCRIPTION FACTOR 45 277 - -
Vivi2g07770 287 Coils Coil 149 176 - -
Vivi2g07770 287 MobiDBLite consensus disorder prediction 98 112 - -
Vivi2g07770 287 Pfam Helix-loop-helix DNA-binding domain 115 160 IPR011598 GO:0046983
Vivi2g07770 287 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 110 159 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07770 Vivi-Chr2 225538922 225540070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07770 95 274 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.095 9.63e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g07770 HLH 1.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07770 - - vvo:131651486 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07770 2 225538922 225540070 Vivi5g00203 5 2450544 2452446 PCT