Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07768 ATGTGGAGTTCAAGCAGAGTCTCCGAAGAGGAACCGAGTGAATCATTTCCATTCTCCACTTCCGTTTTCAATTTCTCTTCCGGAAACCCTAGAATCGAAGAAACCCGCGGCCTCATGCACTTCTTCCCCGACGATTCTTCTCCTTCTCTTCCGGTCGAACGGAAACCACTGGCATGTGTTCTTGGAGTACCGAATCACATGACATATGCCGATTTCTGCCAATTCTGTGGCTCCTTTATTCAGCATATTCTTGAAATGCGTATTGTGAGAATGGATTCGATGGAAGATCGTTACAGTGTTTTGATTCGCTTCGATGAACAGCAATCGACGGACGCGTTTTACACTCATTATAATGGTCGACGTTTCTCGTCTCTTGAGGTTGAGGTGTGCCGTGTTGTTTTTACATTGGATGTGCAGTATACTGGCTCGATTGAACATGCGCAACCTTCCAATGCTACTTCAACTGAACAGCCAACATGTCCAGTTTGCCTTGAGAGATTAGATCAAGACACAAATGGAATTCTTACTACCATATGCAATCATTCATTCCATGTTTCCTGTATTTCAAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAACAGCAAGCTGAAAAATCTATATGTTTCATTTGTCAAACCACTGAGAACCTTTGGATATGTGTTATATGTGGTTTTGTTGGTTGTGGAAGATATAAAGGAGGGCATGCCATAATACACTGGAAAGAGACGCAACATTGCTATTCCTTAGAAGTGGAAACTAAGCGCGTCTGGGATTATGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACCGATGGGAAGTTAGTTGAGCTGAACTCTCACTGTGTGAACGCAGACAGTGGATGTGGCAGCTGCGGAGATAATGCCATGAGAGAGGCTATACTTAATAGTAAAGTCGAAGCTATTGTCAATGAATACAATGAGTTGCTTGCTACTCAGCTCGAAAACCAAAAATTGTATTTTGAATCCTTATTACAACAAGTAGAACAAGAAACTGAAGGAAAAATTTCTGTAGCTGTTCAAAAGGCTGTGAGTCTCAAACAGCAAAAGATTCAGTCCAAGATCGATAGATGTAACAAAGAGAAGAAATTTCTGGATGAGCTTAACGACAATCTCTTGAAGAATGAGGAGATCTGGAAAGCCAAGATACTTGAGATAGAAGAGAGGGAGAAAAAAGCTTTAAAACGGACTGACGACAAGATAACGGGTCTAGAAAAGCAGCTTAGTGACCTCATGGTTTGTCTTGAGGGTGGAAAGGCGGTAGAACAGCTGCCATTGCTAAATGATACAAATGGTGGAACTGTCTCTGACATTTCAAAAGAATCCTCATCAACTTTGTAG 1377 0.4176 MWSSSRVSEEEPSESFPFSTSVFNFSSGNPRIEETRGLMHFFPDDSSPSLPVERKPLACVLGVPNHMTYADFCQFCGSFIQHILEMRIVRMDSMEDRYSVLIRFDEQQSTDAFYTHYNGRRFSSLEVEVCRVVFTLDVQYTGSIEHAQPSNATSTEQPTCPVCLERLDQDTNGILTTICNHSFHVSCISKWADSSCPVCRYCQQQAEKSICFICQTTENLWICVICGFVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNSHCVNADSGCGSCGDNAMREAILNSKVEAIVNEYNELLATQLENQKLYFESLLQQVEQETEGKISVAVQKAVSLKQQKIQSKIDRCNKEKKFLDELNDNLLKNEEIWKAKILEIEEREKKALKRTDDKITGLEKQLSDLMVCLEGGKAVEQLPLLNDTNGGTVSDISKESSSTL 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07768 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 288 IPR013083 -
Vivi2g07768 458 CDD RING-H2_BRAP2 158 201 IPR047243 -
Vivi2g07768 458 Pfam Zn-finger in ubiquitin-hydrolases and other protein 211 270 IPR001607 GO:0008270
Vivi2g07768 458 SUPERFAMILY RING/U-box 176 275 - -
Vivi2g07768 458 Pfam BRCA1-associated protein 2 51 147 IPR011422 -
Vivi2g07768 458 Coils Coil 367 387 - -
Vivi2g07768 458 Coils Coil 399 419 - -
Vivi2g07768 458 Coils Coil 323 343 - -
Vivi2g07768 458 ProSiteProfiles Zinc finger UBP-type profile. 194 287 IPR001607 GO:0008270
Vivi2g07768 458 SMART Zf_UBP_1 210 259 IPR001607 GO:0008270
Vivi2g07768 458 ProSiteProfiles Zinc finger RING-type profile. 160 200 IPR001841 -
Vivi2g07768 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 194 IPR013083 -
Vivi2g07768 458 PANTHER BRCA1-ASSOCIATED PROTEIN 14 454 - -
Vivi2g07768 458 Pfam Ring finger domain 159 200 IPR001841 -
Vivi2g07768 458 CDD RRM_BRAP2_like 59 139 - -
Vivi2g07768 458 SMART ring_2 160 199 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07768 Vivi-Chr2 225517884 225521781 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07768 156 200 C3H Transcription Factor Family AT1G72220 46.809 1.35e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07768 K10632 - gmx:100794688 763.066