Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07729 ATGGCAGTTATTTCCCTCTCTCTTCTTCCTCCTCCTTCTACGACTCACTCTTGCTTCTGTGCTACCGGAATCCATTTCCGTTCCAACAATTTCCTTTCGATTCATTCTCCTTCTCCATCTCCTTTTCCTTCTACTTTCTCTAACTCTAATTATAAATTCTCCGCTAGAAGAAAACGATTTCACACTGTTTTTGCTGCTTCTTCTGATTATTATGCTACTCTCGGAGTTCCCAAATCCGCCACCGTCAAAGATATCAAAGCCGCTTATCGAAGGTTAGCTCGTCAGTATCATCCTGATGTGAACAAAGAGCCTGGGGCAACTGATAAGTTTAAAGAGATTAGTAATGCCTATGAGGTGCTATCAGATGACAAAAAGAGGGCTTTGTATGATCAATATGGCGAGGCAGGGGTTAAGAGCTCAGTGGGAGGAGGATCAAGTGCCTATGCGACAAATCCATTTGATTTATTTGAGACATTTTTTGGGTCAAATATGGGCGGCTTTGCTGGCATGGATCCAACTGGATTTGGCACGCGGCGTCGTAGTACTGTTACTAAGGGTGAAGACATCCGGTATGATTTCTCCTTGGAATTTTCTGAGGCAATTTTCGGAACAGAGAAAGAATTTGAGCTTTTCCATTTAGAAACATGTGAAGCCTGTACTGGTACTGGTGCAAAGTTAGGATCCAAGATGAGAGTATGTTCAACTTGTGGTGGCAGGGGTCAGGTGATGAGGACCGAACAAACACCTTTTGGGTTGTTCTCACAGGTTTCAGTATGTCCAAACTGTGGAGGTGATGGTGAAGTCATATCTGAAAATTGCCGTAAATGCAGTGGTGCAGGACGCATACGGGTTAAGAAAAATATGAAAGTTAAAGTTCCTCCCGGGGTTAGCTCAGGCAGTATCTTAAGAGTCACTGGAGAGGGTGATGCTGGACCAAGAGGGGGTCCTCCAGGAGATCTTTATGTATATCTTGATGTGCTTGAGATACCGGGAATTCAAAGAGATGACATTAATCTTCGCTCAACAATATCAATCACTTATCTAGATGCTATACTGGGGTCTGTAGTGAAGGTAAAGACGGTTGAAGGCACTTCTGAACTACAAATCCCTTCTGGTACCCAACCTGGAGATGTCCTCGTCCTTGCAAAGAAGGGTGTACCAAAATTAAACAGACCCTCAATACGTGGTGACCACTTATTTACTGTTAAAGTTACAATACCAAAACGTATCAGTTCAAAGGAGCGGGAGGTGCTTGAAGAACTTGCTTCTCTAGGTGACACAAGTAATCATTCAAGATCCCGTCCTAAGACCCAATCTTCCACCGGAAGTAAGGCAGCTCCTGCAGCTCAAAGGGCCGAAAGTCCAATAGCAACAGTCACAGAAAAACCAGAGAAATCAGAAGAACAAGAAGAACAAGATGATGACTTATGGAACAAACTAAAGAACGTGGCTGGGTCTGTGGCAAATGGAGCTCTAAAGTGGTTTAAAGATAATCTCTAG 1500 0.4353 MAVISLSLLPPPSTTHSCFCATGIHFRSNNFLSIHSPSPSPFPSTFSNSNYKFSARRKRFHTVFAASSDYYATLGVPKSATVKDIKAAYRRLARQYHPDVNKEPGATDKFKEISNAYEVLSDDKKRALYDQYGEAGVKSSVGGGSSAYATNPFDLFETFFGSNMGGFAGMDPTGFGTRRRSTVTKGEDIRYDFSLEFSEAIFGTEKEFELFHLETCEACTGTGAKLGSKMRVCSTCGGRGQVMRTEQTPFGLFSQVSVCPNCGGDGEVISENCRKCSGAGRIRVKKNMKVKVPPGVSSGSILRVTGEGDAGPRGGPPGDLYVYLDVLEIPGIQRDDINLRSTISITYLDAILGSVVKVKTVEGTSELQIPSGTQPGDVLVLAKKGVPKLNRPSIRGDHLFTVKVTIPKRISSKEREVLEELASLGDTSNHSRSRPKTQSSTGSKAAPAAQRAESPIATVTEKPEKSEEQEEQDDDLWNKLKNVAGSVANGALKWFKDNL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07729 499 Gene3D - 216 280 - -
Vivi2g07729 499 Hamap Chaperone protein DnaJ [dnaJ]. 66 483 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vivi2g07729 499 ProSitePatterns Nt-dnaJ domain signature. 110 129 IPR018253 -
Vivi2g07729 499 MobiDBLite consensus disorder prediction 458 478 - -
Vivi2g07729 499 CDD DnaJ_zf 216 280 IPR001305 GO:0031072|GO:0051082
Vivi2g07729 499 Gene3D - 332 424 - -
Vivi2g07729 499 ProSiteProfiles Zinc finger CR-type profile. 203 285 IPR001305 GO:0031072|GO:0051082
Vivi2g07729 499 FunFam Chaperone protein dnaJ A6 chloroplastic 66 172 - -
Vivi2g07729 499 Pfam DnaJ domain 69 130 IPR001623 -
Vivi2g07729 499 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 36 432 - -
Vivi2g07729 499 Gene3D DnaJ domain 65 171 IPR036869 -
Vivi2g07729 499 Pfam DnaJ central domain 216 280 IPR001305 GO:0031072|GO:0051082
Vivi2g07729 499 CDD DnaJ_C 187 410 - -
Vivi2g07729 499 FunFam Chaperone protein dnaJ A6 chloroplastic 216 280 - -
Vivi2g07729 499 CDD DnaJ 69 122 IPR001623 -
Vivi2g07729 499 FunFam Molecular chaperone Hsp40/DnaJ family protein 332 424 - -
Vivi2g07729 499 Pfam DnaJ C terminal domain 189 407 IPR002939 -
Vivi2g07729 499 Gene3D - 186 322 - -
Vivi2g07729 499 SUPERFAMILY HSP40/DnaJ peptide-binding domain 333 418 IPR008971 GO:0006457|GO:0051082
Vivi2g07729 499 FunFam Putative Mitochondrial DnaJ chaperone 275 322 - -
Vivi2g07729 499 SUPERFAMILY Chaperone J-domain 65 175 IPR036869 -
Vivi2g07729 499 MobiDBLite consensus disorder prediction 424 447 - -
Vivi2g07729 499 MobiDBLite consensus disorder prediction 422 478 - -
Vivi2g07729 499 SUPERFAMILY HSP40/DnaJ peptide-binding domain 184 328 IPR008971 GO:0006457|GO:0051082
Vivi2g07729 499 PRINTS DnaJ domain signature 105 125 IPR001623 -
Vivi2g07729 499 PRINTS DnaJ domain signature 125 144 IPR001623 -
Vivi2g07729 499 PRINTS DnaJ domain signature 71 89 IPR001623 -
Vivi2g07729 499 PRINTS DnaJ domain signature 89 104 IPR001623 -
Vivi2g07729 499 NCBIfam molecular chaperone DnaJ 69 423 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vivi2g07729 499 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 203 283 IPR036410 -
Vivi2g07729 499 SMART dnaj_3 68 125 IPR001623 -
Vivi2g07729 499 ProSiteProfiles dnaJ domain profile. 69 133 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07729 Vivi-Chr2 225020089 225027989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07729 70 132 C2H2 Transcription Factor Family AT1G74250 46.377 4.27e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07729 K03686 - gmx:100798567 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07729 2 225020089 225027989 Vivi2g07729 2 225020089 225027989 ECH