Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07648 ATGAAAATTGTTAGCCGGAGAACGTCAAAATTCAGGTTTCGATTACGAAAATGGATTGATGATCAAAACTTAAAGAACGAAAGTAAAGCTAGATATAGATTGAGGTTGGGTATGCAGACGGGAGGGTGGTCAAAAGTAACCTATTTGAAGCGTTCAGCGGGGCGGTGGGACACCTTTCCTTATGGGGGGAGGAACAGAAATTCTTCAAGTGGCAAAGAGGTGATTTCCATGTACATTTCAGAGTTCCCTGAGTTTTACTCTGCTAGGGAGCTTTTTGAGCTTTTCGGTTGTTCTGGCCAAGTGGTGGAGGTAGCTATTTCTCCCAGAAGAAACAAGTTCGGTAAGCGATTTGGTTTCGCTAGATTCATCGATGTAGAAGATGCTCGAACGTTAGCGGTTCGTCTGGACAATATAATTATTGATGGCAGGAAAATTCATGTATACTTGCCGAGGTTTACGAGAGTTGCTTTCGGTTCAGGAGGTAGGCGTGAGTTTTTGGAGAAGGCGAAGCATCCTCAACCACAAATTAGGCCACAGAGAGCGGAAGTGGGGAAGAGTAGGGGCAATTGGCAAGCTGGTCCTATCAGTAATAATCCACTTTCCTATGCTGAGGCTGTGGCTTCTGAGAATTCTGGTTTTGTATCAAAAGTGAATGAGCAGGTCCTTTTCGATTTCAATTCTGATTATGTTCTTAGAGGTAGGATGGAGAAGGCTTATGTGGGTAAGGTTTGTATTCCGGGGTCTGCGTACACAATTCAAACTCACATGGAATTGGACGGGGTTTACGCGATTAAAGTAACTCCATTAGGCGGTAATTGTTGTTTGCTCGAAGAAAGGGAAGAAGGGTTCATTGAAGACTTGATTGGTGAAGGCGAGACTTGGTGGAAGTCTTGGTTTTCCGAAGTCAAGAAGTGGGAGGCGGATACGATAGACAAAGGTAGGGACGCGTGGTTTCGAATTTATGGTACTCCAGCTCATGTGTGGAGTTCTGAGTTTTTCGTAGCTTTGGCCAAAAATTGGGGGAGTTTCATCTGTTGGGATGAGCACACTGCTAGTGGCGAGGCTTTTGTTGTGGCTAGAGTTATGGTGAATATCCCTGTATCTTTATCGATTCCTGACTCTGTTTCGGTTAATATAGACGGAAGGAGGGTGGTTCTTTTTGTTAGGGAAGATGCGGCGGGTTTGTTTCGATCGTCGACTCGAAATCAGTTGCATAATTCTTCAGTTAGCGTGAGTTCTGACACTACAAAAAATGCTCCATTTGCGGAGGTTTTTTTTGCAATTTGA 1287 0.4421 MKIVSRRTSKFRFRLRKWIDDQNLKNESKARYRLRLGMQTGGWSKVTYLKRSAGRWDTFPYGGRNRNSSSGKEVISMYISEFPEFYSARELFELFGCSGQVVEVAISPRRNKFGKRFGFARFIDVEDARTLAVRLDNIIIDGRKIHVYLPRFTRVAFGSGGRREFLEKAKHPQPQIRPQRAEVGKSRGNWQAGPISNNPLSYAEAVASENSGFVSKVNEQVLFDFNSDYVLRGRMEKAYVGKVCIPGSAYTIQTHMELDGVYAIKVTPLGGNCCLLEEREEGFIEDLIGEGETWWKSWFSEVKKWEADTIDKGRDAWFRIYGTPAHVWSSEFFVALAKNWGSFICWDEHTASGEAFVVARVMVNIPVSLSIPDSVSVNIDGRRVVLFVREDAAGLFRSSTRNQLHNSSVSVSSDTTKNAPFAEVFFAI 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07648 428 CDD RRM_SF 78 147 - -
Vivi2g07648 428 PANTHER DUF4283 DOMAIN PROTEIN 242 390 - -
Vivi2g07648 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 146 IPR000504 GO:0003723
Vivi2g07648 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 75 152 IPR000504 GO:0003723
Vivi2g07648 428 Pfam Domain of unknown function (DUF4283) 263 363 IPR025558 -
Vivi2g07648 428 SUPERFAMILY RNA-binding domain, RBD 64 155 IPR035979 GO:0003676
Vivi2g07648 428 Gene3D - 60 156 IPR012677 -
Vivi2g07648 428 SMART rrm1_1 76 148 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07648 Vivi-Chr2 223158942 223163058 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07648 76 191 Eukaryotic Initiation Factors Gene Family AT3G16380 26.230 1.11e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07648 - - vvo:131651443 872.078