Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07647 ATGGAGACAAGTATAGACAAGTTGGGTATGCAGACGGGAGGGTGGTCAAAAGTAACCTATTTGAAGCGTTCAGCGGGGCGGTGGGACACCTTTCCTTATGGGGGGAGGAACAAAAATTCTTCAAGTGGCAAAGAGGTGATTTCCATGTACATTTCAGAGTTCCCTGAGTTTTACTCTGCTAGGGAGCTTTTTGAGCTTTTCGGTTGTTCTGGCCAAGTGGTGGAGGTAGCTATTTCTCCCAGAAGAAACAAGTTCGGTAAGCGATTTGGTTTCGCTAGATTCATCGATGTAGAAGATGCTCGAACGTTAGCGGTTCGTCTGGACAATATAATTATTGATGGCAGGAAAATTCATGTATACTTGCCGAGGTTTACGAGAGTTGCTTTCGGTTCAGGAGGTAGGCGTGAGTTTGTGGAGAAGGCGAAGCATCCTCAACCACAAATTAGGCCACAGAGAGCGGAAGTGGGGAAGAGTAGGGGCAATTGGCAAGCTGGTCCTATCAGTAATAATCCACTTTCCTATGCTGAGGCTGTGGCTTCTGAGAATTCTGGTTTTGTATCAAAAGTGAATGAGCAGGTCCTTTTCGATTTCAATTCTGATTATGTTCTTAGAGGTAGGATGGAGAAGGCTTATGTGGGTAAGGTTTGTATTCCGGGGTCTGCGTACACAATTCAAACTCACATGGAATTGGACGGGGTTTACGCGATTAAAGTAACTCCATTAGGCGGTAATTGTTGTTTGCTCGAAGAAAGGGAAGAAGGGTTCATTGAAGACTTGATTGGTGAAGGCGAGACTTGGTGGAAGTCTTGGTTTTCCGAAGTCAAGAAGTGGGAGGCGGATACGATAGACAAAGGTAGGGACGCGTGGTTTCGAATTTATGGTACTCCAGCTCATGTGTGGATTTCTGAGTTTTTCGTAGCTTTGGCCAAAAATTGGGGGAGTTTCATCTGTTGGGATGAGCACACTGCTAGTGGCGAGGCTTTTGTTGTGGCTAGAGTTATGGTGAATATCCCTGTATCTTTATCGATTCCTGACTCTGTTTCGGTTAATATAGACGGAAGGAGGGTGGTTCTTTTTGTTAGGGAAGATGCGGCGGGTTTGTTTCGATCGTCGACTCGAAATCAGTTGCATAATTCTTCAGTTAGCGTGAGTTCTGACACTACAAAAAATGCTCCATTTGCGGAGGTTTTTTTTGCAATTTGA 1203 0.4497 METSIDKLGMQTGGWSKVTYLKRSAGRWDTFPYGGRNKNSSSGKEVISMYISEFPEFYSARELFELFGCSGQVVEVAISPRRNKFGKRFGFARFIDVEDARTLAVRLDNIIIDGRKIHVYLPRFTRVAFGSGGRREFVEKAKHPQPQIRPQRAEVGKSRGNWQAGPISNNPLSYAEAVASENSGFVSKVNEQVLFDFNSDYVLRGRMEKAYVGKVCIPGSAYTIQTHMELDGVYAIKVTPLGGNCCLLEEREEGFIEDLIGEGETWWKSWFSEVKKWEADTIDKGRDAWFRIYGTPAHVWISEFFVALAKNWGSFICWDEHTASGEAFVVARVMVNIPVSLSIPDSVSVNIDGRRVVLFVREDAAGLFRSSTRNQLHNSSVSVSSDTTKNAPFAEVFFAI 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07647 400 PANTHER DUF4283 DOMAIN PROTEIN 214 362 - -
Vivi2g07647 400 CDD RRM_SF 50 119 - -
Vivi2g07647 400 SMART rrm1_1 48 120 IPR000504 GO:0003723
Vivi2g07647 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 118 IPR000504 GO:0003723
Vivi2g07647 400 Pfam Domain of unknown function (DUF4283) 235 335 IPR025558 -
Vivi2g07647 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 124 IPR000504 GO:0003723
Vivi2g07647 400 Gene3D - 32 128 IPR012677 -
Vivi2g07647 400 SUPERFAMILY RNA-binding domain, RBD 36 127 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07647 Vivi-Chr2 223123556 223125164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07647 48 163 Eukaryotic Initiation Factors Gene Family AT3G16380 26.230 8.75e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07647 - - vvo:131651443 799.275