Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07631 ATGGTTGGAACTACAATTAGCTATGCAAAAGCAAAGAAAGGGTGTCTCACTCAAAGACTTCCAAAGATATATGTGAAAAAATATTGGAAAGGAACCTCAAATCCCATATTTTTTAGGCTTCCAAATGGTGTTCAACACAAAATATTCTGGGAAGAACGTGATGGTGATGTTTGGTTTCAAAAAAATTGGAAAGATTTTGCAAAGTGTTTAAAATATGGAGATATCTTAACTTTTAAACATACTGGTGGAGCATATTTCAAAGTAAAGATATTTGGTAGAAATTCTTTAGAAATAAATTATTCAAATATCAAATGTTTAGATGAAGTTGTTGATTTAAGTGATGATGAGAGTGAAGAACGCACACAAACTCAAAAGAGAAAAAATGGCAAAAGAAAAGTTGCAGATTTGAATCCAAGTAGAAACAAAGGTGTGATTAAGAAGGCCAAGAAATGTTCAAACATAGGAAATATTGATGATGGGAGAGTTAATAAGGAGATTCCATATTTTGAAGTCACATTGACACCAACTTATGTCAATTATTATAGTATGAGGATACCAAATGTGTTTTCAAGAAAATATTTGAAAGAGACGGAAGAAATTGCAATCTTGAAAGTTGGGGAGGACATGACTATGGAAGTGGGGTTCAGGTTTGATGCTAATGCCAAAGGAATGGTTTTTCAAAATGGTTGGAAGAATTTTTCACAAAAATATAATTTACAAATTGGTGATATTTGTAAATTTGTGATGACACAATCCAAACCACTTTTATTTTCCATTGCTATTACTCGAGCCAAAATGGAATCAAAACCTAAGAAGTTCCAAGGTGTCTCTTCGGGTGATGATACAATTCCAAAAAGAAAAAGCATTGGAGAAAGTTCTAGAGGTAGAGGTCGCCCAAAAAAACATGTTTCCAAAGATATGGTGTGA 927 0.3279 MVGTTISYAKAKKGCLTQRLPKIYVKKYWKGTSNPIFFRLPNGVQHKIFWEERDGDVWFQKNWKDFAKCLKYGDILTFKHTGGAYFKVKIFGRNSLEINYSNIKCLDEVVDLSDDESEERTQTQKRKNGKRKVADLNPSRNKGVIKKAKKCSNIGNIDDGRVNKEIPYFEVTLTPTYVNYYSMRIPNVFSRKYLKETEEIAILKVGEDMTMEVGFRFDANAKGMVFQNGWKNFSQKYNLQIGDICKFVMTQSKPLLFSIAITRAKMESKPKKFQGVSSGDDTIPKRKSIGESSRGRGRPKKHVSKDMV 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07631 308 SUPERFAMILY DNA-binding pseudobarrel domain 163 261 IPR015300 -
Vivi2g07631 308 CDD B3_DNA 167 253 IPR003340 GO:0003677
Vivi2g07631 308 CDD B3_DNA 19 91 IPR003340 GO:0003677
Vivi2g07631 308 MobiDBLite consensus disorder prediction 284 308 - -
Vivi2g07631 308 MobiDBLite consensus disorder prediction 268 308 - -
Vivi2g07631 308 Gene3D - 143 266 IPR015300 -
Vivi2g07631 308 ProSiteProfiles B3 DNA-binding domain profile. 168 265 IPR003340 GO:0003677
Vivi2g07631 308 SMART B3_2 8 94 IPR003340 GO:0003677
Vivi2g07631 308 SMART B3_2 169 265 IPR003340 GO:0003677
Vivi2g07631 308 Pfam B3 DNA binding domain 169 253 IPR003340 GO:0003677
Vivi2g07631 308 Gene3D - 5 95 IPR015300 -
Vivi2g07631 308 PANTHER B3 DOMAIN-CONTAINING 13 132 - -
Vivi2g07631 308 SUPERFAMILY DNA-binding pseudobarrel domain 18 94 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07631 Vivi-Chr2 222855000 222858303 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07631 63 260 REM Transcription Factor Family AT5G09780 23.913 3.55e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi2g07631 B3 6.2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07631 - - vvo:131633070 585.104