Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07630 ATGATGTATAGGAACTTCTTCAATCAATGCCACCCATCATTTTGTAGTAAGACCATCATAAATACAAAGTTTGGTAGAAACAAAGGTGTGATTAAGAAGGCCAAGAAATGTTCAAACATAGGAAATATTGATGATGGGAGAGTTAATAAGGAGATTCCATATTTTGAAGTCACATTGACACCAACTTATGTCAATTATTATAGTATGAGGATACCAAATGTGTTTTCAAGAAAATATTTGAAAGAGACGGAAGAAATTGCAATCTTGAAAGTTGGGGAGGACATGACTATGGAAGTGGGGTTCAGGTTTGATGCTAATGCCAAAGGAATGGTTTTTCAAAATGGTTGGAAGAATTTTTCACAAAAATATAATTTACAAATTGGTGATATTTGTAAATTTGTGATGACACAATCCAAACCACTTTTATTTTCCATTGCTATTACTCGAGCCAAAATGGAATCAAAACCTAAGAAGTTCCAAGGTGTCTCTTCGGGTGATGATACAATTCCAAAAAGAAAAAGCATTGGAGAAAGTTCTAGAGGTAGAGGTCGCCCAAAAAAACATGTTTCCAAAGATATGGTGTGA 585 0.3419 MMYRNFFNQCHPSFCSKTIINTKFGRNKGVIKKAKKCSNIGNIDDGRVNKEIPYFEVTLTPTYVNYYSMRIPNVFSRKYLKETEEIAILKVGEDMTMEVGFRFDANAKGMVFQNGWKNFSQKYNLQIGDICKFVMTQSKPLLFSIAITRAKMESKPKKFQGVSSGDDTIPKRKSIGESSRGRGRPKKHVSKDMV 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07630 194 Gene3D - 32 152 IPR015300 -
Vivi2g07630 194 ProSiteProfiles B3 DNA-binding domain profile. 54 151 IPR003340 GO:0003677
Vivi2g07630 194 CDD B3_DNA 53 139 IPR003340 GO:0003677
Vivi2g07630 194 Pfam B3 DNA binding domain 55 140 IPR003340 GO:0003677
Vivi2g07630 194 SMART B3_2 55 151 IPR003340 GO:0003677
Vivi2g07630 194 MobiDBLite consensus disorder prediction 170 194 - -
Vivi2g07630 194 SUPERFAMILY DNA-binding pseudobarrel domain 49 147 IPR015300 -
Vivi2g07630 194 MobiDBLite consensus disorder prediction 154 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07630 Vivi-Chr2 222821413 222824282 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07630 53 149 REM Transcription Factor Family AT1G49480 29.293 1.29e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi2g07630 B3 2.3e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07630 - - vvo:131648323 398.282