Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07573 ATGACCTTCTGGCGAGAACAATTGAGTAATAATGGTTCAAACCCTTCCTTGCTTAGAGCACTTTGTAATGCATATGGATGGCAATATCTCCGGCTTGGTTTATTGAAGGTGATAAATGATGGTATTGGTTTTGCGGGACCATTACTTCTCAATAAGCTGATCAAGTTTCTTCAACAAGGTTCCGCAACAAGTTCAGCAAGTTGGGATGGGTATTTACTTGCACTATCCTTAGGTCTCACATCAATAATTAAATCTTTTTTAGATACACAATATACTTTTCGTCTTGCCAAACTGAAGTTAAAGCTGCGATCCAGTATCATGACTCTAATCTATGAGAAGTGTCTATTTGTGAACCTAGCAGAGCGTTCAAAATTCACAAATGGAGAAATTCAGACATTTATGTCGGTGGATGCTGACAGAACTGTTAACTTGTGTAATAGTTTTCATGATATATGGAGCCTGCCTCTACAAATTGGAGTGGCACTTTATCTTCTGTATACTCAAGTCAAATTTGCATTTGTGTCTGGATTAGCAATAACCATTTTGTTGATACCAGTGAATAAATGGATATCAACATTGATTGCACGTGCCACTGAGCAAATGATGAAAGAGAAGGATGAAAGGATTCGTAGGACCGGGGAACTTTTGACTTATATTCGCACATTGAAGATGTATGGATGGGAACTTCTTTTTTCTAGTTGGTTAATGGAGACAAGATCTTTGGAAGTGAAACACTTAGCTACTCGGAAGTACTTGGATGCATGGTGTGTATTCTTTTGGGCTACAACACCATCGCTCTTTTCTCTTTGCACATTTGGACTCTTTGCATTGATGGGACATCAACTTGATGCCGCAACGGTTTTCACTTGTCTTGCTTTGTTTAACACGCTGATTTCACCACTTAATTCATTCCCTTGGGTTATTAATGGATTGATTGATGCCATCATATCCTCCCGGCGGCTGAGTAGGTTTCTCTCTTGCTCTGAACATAGACGCAAAGTGGGAGAGAACATTTCATGTTCATCATCATTCTCAAGTGTACAACCTGATTCCTTACAAGATTTGGCTGTCTCTATCCAAGATGCATGCTGTTCTTGGTCCAGCAGTGACGAAAAAGCATTGAATACGGTGTTGAATCATGTGACTCTTAGCCTGTCAAAGGGTTCCTTTGTTGCAGTTATTGGAGAGGTTGGTTCCGGAAAATCGTCCATGTTATATTCAATTCTTGGAGAAATGCGGCTTGATCAAGGCTCTATTTATTCCAATGGATCTATAGCTTATGTACCACAGGTCCCTTGGATTTTATCTGGAACAGTACGCGACAATATATTACTTGGGAAAAGCTATCAACCTGAAAGGTATACGGATACAATAAAAGCGTGTGCGTTAGATGTTGATATCTCATTGATGGCTGGTGGTGACATCGCATATATTGGAGAGAAAGGAGTCAACTTATCAGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGAGTACTGTATCATGACTCGGATGTTATCATGCTCGATGATGTCCTGAGTGCAGTTGATGTACAAGTTGCTCAGTGGATCTTGCACAATGCCATTCTTGGTCCTCTTATGAAGGGAAAAACTAGATTGCTCTGTACCCACAATATTCAGGCAATATCTTCTGCAGATATGATTGTAGTATTGGACAAAGGACATGTAAAGTGGATGGGAAGTTCAGCTGACTTTCCAACTTCTTCATATACAGCATTCTCCCCATTGAATGAAATGGATTCAACTTCACATAATCAGCAGCAATCTTGCAGCACAAATTCTTCTATAACCAAGGAGCAGTCTCTACCTGATAGAATTCTCACGCAAGCTCTAGAGGAAGCAGAGGATGTAATTGAAGTTGAATTAAGGAAAGAGGGAAAAGTTGAACTTGGAGTGTATAAGAGTTATGCTGCTTTTACTGGCTGGTTCATTGCCGTGATTATATGTCTATCTGCTATTCTGATGCAAGCTTCGCGTAATGGAAATGATTTATGGCTTTCATATTGGGTTGATACCACAGCAGAAGACGGACAAACAAGTAATTCTAAGTCTTTCTATCTGACTATTCTATGTCTCTTTTGTATTATGAATTCCTTTTTCACACTGGTGAGGGCATTCTCTTTTGCATTTGGTGGTTTACAAGCGGCAACTAAGGTACACAATAAACTGCTCAGCAAGCTTATCAATGCCCCTGTGCAATTCTTTGATCAGACCCCGGGTGGAAGAATACTGAATAGGTTATCATCAGATCTTTATACAATTGATGATTCTCTCCCATTTATTATGAACATTCTCCTGGCTAATTTCGTAGGCCTGCTGGGTATTGCAATTATTTTGTCTTACGTGCAGGTCTTCTTCTTAGTTTTGTTATTGCCATTTTGGTATATCTACAGTAGACTTCAGTTCTTCTACAGGTCAACATCAAGAGAATTAAGAAGACTGGATAGTGTTTCTCGCTCTCCAATATATACATCTTTCACTGAAACACTTGATGGATCATCAACTATCCGAGCCTTTAAATCTGAGGACTTTTTCTTTACCAAATTTAGTGACCACATGATATTATATCAGAAGACTTCCTATACTGAAACAGTGGCAAGTCTGTGGCTTTCGTTGCGTCTTCAGTTATTAGCTGCATTTATAATCTCATTCATAGCCCTGATGGCTGTTGTTGGATCTCAAGGAATTCTGCCAATCAGTTTTGGTACCCCAGGATTGGTTGGATTGGCCCTCTCATATGCAGCTCCAATTGTGTCTCTGCTGGGGAGTTTTCTAACAAGTTTTACTGAAACAGAGAAAGAGATGGTTTCAATTGAAAGAGCCCTTCAATATATGGACATTCCTCAAGAAGAACAAGCTGGATCTCTATACTTGAATCCAGATTGGCCAAAACAAGGAGTTATTGAATTCCAAAATGTTACTTTGAAATATATGCCATCTTTACCACCTGCACTCTGCAATCTTAGTTTTAAAATTGAAGGAGGAACACAGGTTGGAATAATTGGAAGAACAGGTGCTGGAAAGTCTAGTGTGTTAAATTCCCTTTTCCGTCTTACCCCAATATGTGCAGGCTCCATCACAGTTGATGGCATGGATATACAAAATATTCCTGTGAGAGAACTACGCACCCATTTGGCTATTGTTCCTCAGAGTCCATTCTTGTTTGAAGGACTATTAAGGGATAACCTAGATCCATTCAAAATGAATGATGACTCGAAAATTTGGGATGCACTGGAGAAGTGTCATGTGAAAGAGGAAGTAGAAGTAGCTGGAGGGTTGGATATTCTTGTGAAGGAAGGGGGAATGTCATTTTCAGTTGGCCAAAGGCAACTTCTTTGCCTTGCACGAGCACTTCTTAGATCCTCGAACGTTCTTTGTTTGGATGAATGCACTGCCAGTGTGGACATTCAAACTGCTTCGCTGCTGCAAAAAACCATATCCAGTGAATGCAAAGGAATGACGGTGGTCACAATTGCTCACCGGATTTCAACTGTCATAAATATGGACAATATTTTAATTCTTGATCATGGAAACCTGGTTGAACAAGGAAATCCACAGATTCTTCTGAAGGATTGCACCTCTATATTTTTTAGTTTTGTTAAAGCTTCATCTTTGTAA 3636 0.3974 MTFWREQLSNNGSNPSLLRALCNAYGWQYLRLGLLKVINDGIGFAGPLLLNKLIKFLQQGSATSSASWDGYLLALSLGLTSIIKSFLDTQYTFRLAKLKLKLRSSIMTLIYEKCLFVNLAERSKFTNGEIQTFMSVDADRTVNLCNSFHDIWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWISTLIARATEQMMKEKDERIRRTGELLTYIRTLKMYGWELLFSSWLMETRSLEVKHLATRKYLDAWCVFFWATTPSLFSLCTFGLFALMGHQLDAATVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLSCSEHRRKVGENISCSSSFSSVQPDSLQDLAVSIQDACCSWSSSDEKALNTVLNHVTLSLSKGSFVAVIGEVGSGKSSMLYSILGEMRLDQGSIYSNGSIAYVPQVPWILSGTVRDNILLGKSYQPERYTDTIKACALDVDISLMAGGDIAYIGEKGVNLSGGQRARLALARVLYHDSDVIMLDDVLSAVDVQVAQWILHNAILGPLMKGKTRLLCTHNIQAISSADMIVVLDKGHVKWMGSSADFPTSSYTAFSPLNEMDSTSHNQQQSCSTNSSITKEQSLPDRILTQALEEAEDVIEVELRKEGKVELGVYKSYAAFTGWFIAVIICLSAILMQASRNGNDLWLSYWVDTTAEDGQTSNSKSFYLTILCLFCIMNSFFTLVRAFSFAFGGLQAATKVHNKLLSKLINAPVQFFDQTPGGRILNRLSSDLYTIDDSLPFIMNILLANFVGLLGIAIILSYVQVFFLVLLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKSEDFFFTKFSDHMILYQKTSYTETVASLWLSLRLQLLAAFIISFIALMAVVGSQGILPISFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSIERALQYMDIPQEEQAGSLYLNPDWPKQGVIEFQNVTLKYMPSLPPALCNLSFKIEGGTQVGIIGRTGAGKSSVLNSLFRLTPICAGSITVDGMDIQNIPVRELRTHLAIVPQSPFLFEGLLRDNLDPFKMNDDSKIWDALEKCHVKEEVEVAGGLDILVKEGGMSFSVGQRQLLCLARALLRSSNVLCLDECTASVDIQTASLLQKTISSECKGMTVVTIAHRISTVINMDNILILDHGNLVEQGNPQILLKDCTSIFFSFVKASSL 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07573 1211 Pfam ABC transporter 992 1138 IPR003439 GO:0005524
Vivi2g07573 1211 Pfam ABC transporter 378 510 IPR003439 GO:0005524
Vivi2g07573 1211 CDD ABC_6TM_MRP7_D2_like 651 951 - -
Vivi2g07573 1211 ProSitePatterns ABC transporters family signature. 1110 1124 IPR017871 GO:0005524|GO:0016887
Vivi2g07573 1211 Gene3D ABC transporter type 1, transmembrane domain 5 330 IPR036640 GO:0005524|GO:0016020
Vivi2g07573 1211 Gene3D ABC transporter type 1, transmembrane domain 617 958 IPR036640 GO:0005524|GO:0016020
Vivi2g07573 1211 FunFam ATP-binding cassette subfamily C member 10 9 330 - -
Vivi2g07573 1211 SUPERFAMILY ABC transporter transmembrane region 648 956 IPR036640 GO:0005524|GO:0016020
Vivi2g07573 1211 FunFam ABC transporter C family member 13 339 594 - -
Vivi2g07573 1211 SMART AAA_5 387 561 IPR003593 GO:0016887
Vivi2g07573 1211 SMART AAA_5 1000 1190 IPR003593 GO:0016887
Vivi2g07573 1211 CDD ABCC_MRP_domain2 972 1191 - -
Vivi2g07573 1211 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 652 939 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g07573 1211 ProSitePatterns ABC transporters family signature. 485 499 IPR017871 GO:0005524|GO:0016887
Vivi2g07573 1211 Gene3D - 335 607 IPR027417 -
Vivi2g07573 1211 Pfam ABC transporter transmembrane region 33 301 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g07573 1211 Pfam ABC transporter transmembrane region 653 899 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g07573 1211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 571 IPR027417 -
Vivi2g07573 1211 CDD ABCC_MRP_domain1 357 560 - -
Vivi2g07573 1211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 968 1198 IPR027417 -
Vivi2g07573 1211 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 34 313 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g07573 1211 FunFam ATP-binding cassette (ABC) transporter, putative 960 1208 - -
Vivi2g07573 1211 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 974 1207 IPR003439 GO:0005524
Vivi2g07573 1211 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 11 1207 - -
Vivi2g07573 1211 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 357 584 IPR003439 GO:0005524
Vivi2g07573 1211 SUPERFAMILY ABC transporter transmembrane region 18 321 IPR036640 GO:0005524|GO:0016020
Vivi2g07573 1211 FunFam ABC transporter C family member 5 615 957 - -
Vivi2g07573 1211 CDD ABC_6TM_MRP7_D1_like 32 321 - -
Vivi2g07573 1211 Gene3D - 960 1207 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07573 Vivi-Chr2 220944558 220957534 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07573 329 601 Calmodulin-binding Proteins AT2G36910 28.028 3.23e-21 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07573 K05674 - gmx:100814181 2035.38