Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07548 ATGCCTTCAAGACAATTCCCTTCAACAAGTTCCAATCTTTTCACCAAACCCAAGTTTCTATTCATAGCACTCACCATTTCAGCTTCTGTGGTCATTGTGTTTTCAATTCTCTACTTTCTTTACCATCTTTGGCATTCTCTTGTTCATAGAGCAAAGACTATACCTTATGATGCTAGTGCTCCTTTGAAGCTGCAGAGGTTTTGTTATAAGGATTTAAAGCTTGCTACCAATGGTTTTGACACTGCCAATGTCATTGGAAAAGGTGGTTCTGGTACTGTTTTCAAGGGTGTGCTTAAAGATGGAAAGTTTATTGCTATCAAGTGTTTGGACTCTTTGTCTTTGCAATCTGAGAGAGAGTTTCAGAATGAGTTGCAGATTCTTGGAGGGTTGAGATCACCTTTTTTGGTGACCCTTTTGGGCTATTGTGTTGAAAAGAACAAGAGGGTTTTGGTGTATGAGTATATGCCTAATGCAAGCTTGCAAGAGTCACTTTTTGGTGATGAGTGTTTTGGTTTGAGTTGGGAGAGAAGGTTTTGTGTGATTATGGATGTTGCTAGAGCATTGGAGTTTTTGCATCTTGGATGTGATCCACCTGTGATTCATGGTGATATTAAGCCGAGTAACGTGTTGCTTGATTCCGAGTTTCGCGGGAAGATCTCGGATTTCGGGTTGTCGAGGATTAAGGTGGAGGGCGAATTCGGAGTTGATTTGTTTAGCCAGGATTTGGGAAAGAGTCAAGATCTTTGGAAAAGTCAGGATCTTTCAGGTAATTTGACAGTAGAAACTCCTGTGATTGGTACTCCTGTTGAGAGTGTTGGTGAAGTTGATTTTGCTCTTGCTTTGCAAGCTTCGTCTTCGTCGAAAAATAGTAGGACTGGTTTAAATGTAAAAGCGTTGAACTTGAGTTCTTCGAATTATAATGCTAATATTGTTGGTGAGAGTGAAAGTAGAAGTTTAGATGCAAAAGGTAAAGAGGTTTCGAGTTTTGATATGTTTGTTCCTTATGATGATGAGTTTTGTAGCAATGATTATAGTAAGGAGTTGGTTGTGAATAATGCTTGTTTGGTTGATGATGTGAAGGAAAATGGGAAACAATGGGGGAAGGATTGGTGGTGGAGACAAGATGGAAGTGGTGAATTGTGTAGTAAGGATTATGTTAAGGAATGGATTGGGAGTCAGATTTGTCCATCAAATGCTGATTGGGATGATGATGATGATGATGGTATTGCGAATACTAAGAACATCGACATTCCGGAGAAATCCGAGTTGGAAAATTCAAGTCCATTAGATAAAGGTAATGATGCAATTGTAAATGGAACTCGAGCTCGGTTAGATGTTTCTGCGACGGAAGATATGGATAATGGAGTTGTTGGTACAAAAGAAGTGAAAGGAAAGAAAAACCAGAAGAAGAAGAAGAATAGGAAGATGCAAGAGTGGTGGAAAGAAGAACATCTTGATGAGTTAAGCAAGAAGAAGAGAAACAAGCTGAGAAGTCTTCAAACGAAATGGAAGAAAGGGTTGAGAGTTCCGCGATTTGGTTTTGGTTTAGGTAGAAGGTTCTATGTTTGTGAAAGTAATAAGAACTATGGAGATGAAGGAGCGAACGAGTGCGAACAAAATGGCGAGTTTAGCTTCAGAAGAGGTTGGAGGAAAAAAGGCTCGCGCTCGATAGGAAGTGATATGTGGAGTGGCGATCTTTTCAGCCGCGAGCTCAGCAGCACGACTAGTATGAGAGGTACATTGTGTTATGTTGCGCCGGAATATGGAGGGTGTGGATTCTTAATGGAGAAAGCCGATATATACAGTTTCGGAGTTTTGATACTTGTGATTATATCAGGTAGAAGACCGTTACATGTTCTCGCGTCTCCGATGAAGCTTGAGAAAGCGAATTTGATAAGCTGGTGTAGGCATTTGGCTCAGGCTAGTGGAAGTAACATTTTGGAACTAGTTGATGAGAAATTGAAAGATGACTACAATAAGGAGCAAGCAAGTTTGTGTATCAACTTGGCACTCATTTGTTTACAGAAGATTCCGGAGTTGAGGCCGGATATCGGTGATATCGTTAAGATTTTGAAAGGGGAGGTGGAGCTTCCGCCGCTTCCGTTTGAGTTCTCGCCTTCTCCGCCGTCCAGATTGTACAGCAGATCAAGGAGAAAACAGAAAGGCAGTGCAGAAATATAG 2181 0.409 MPSRQFPSTSSNLFTKPKFLFIALTISASVVIVFSILYFLYHLWHSLVHRAKTIPYDASAPLKLQRFCYKDLKLATNGFDTANVIGKGGSGTVFKGVLKDGKFIAIKCLDSLSLQSEREFQNELQILGGLRSPFLVTLLGYCVEKNKRVLVYEYMPNASLQESLFGDECFGLSWERRFCVIMDVARALEFLHLGCDPPVIHGDIKPSNVLLDSEFRGKISDFGLSRIKVEGEFGVDLFSQDLGKSQDLWKSQDLSGNLTVETPVIGTPVESVGEVDFALALQASSSSKNSRTGLNVKALNLSSSNYNANIVGESESRSLDAKGKEVSSFDMFVPYDDEFCSNDYSKELVVNNACLVDDVKENGKQWGKDWWWRQDGSGELCSKDYVKEWIGSQICPSNADWDDDDDDGIANTKNIDIPEKSELENSSPLDKGNDAIVNGTRARLDVSATEDMDNGVVGTKEVKGKKNQKKKKNRKMQEWWKEEHLDELSKKKRNKLRSLQTKWKKGLRVPRFGFGLGRRFYVCESNKNYGDEGANECEQNGEFSFRRGWRKKGSRSIGSDMWSGDLFSRELSSTTSMRGTLCYVAPEYGGCGFLMEKADIYSFGVLILVIISGRRPLHVLASPMKLEKANLISWCRHLAQASGSNILELVDEKLKDDYNKEQASLCINLALICLQKIPELRPDIGDIVKILKGEVELPPLPFEFSPSPPSRLYSRSRRKQKGSAEI 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07548 726 SUPERFAMILY Protein kinase-like (PK-like) 59 711 IPR011009 -
Vivi2g07548 726 Pfam Protein kinase domain 81 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g07548 726 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Vivi2g07548 726 MobiDBLite consensus disorder prediction 408 427 - -
Vivi2g07548 726 MobiDBLite consensus disorder prediction 397 437 - -
Vivi2g07548 726 MobiDBLite consensus disorder prediction 702 726 - -
Vivi2g07548 726 ProSiteProfiles Protein kinase domain profile. 79 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g07548 726 SMART serkin_6 79 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g07548 726 FunFam putative receptor-like protein kinase At1g80870 155 265 - -
Vivi2g07548 726 Gene3D Phosphorylase Kinase; domain 1 46 154 - -
Vivi2g07548 726 FunFam Receptor-like serine/threonine-protein kinase At4g25390 48 154 - -
Vivi2g07548 726 PANTHER OS07G0586332 PROTEIN 11 720 IPR044576 -
Vivi2g07548 726 Gene3D Transferase(Phosphotransferase) domain 1 155 268 - -
Vivi2g07548 726 Gene3D Transferase(Phosphotransferase) domain 1 544 696 - -
Vivi2g07548 726 FunFam Receptor-like serine/threonine-protein kinase At4g25390 546 697 - -
Vivi2g07548 726 ProSitePatterns Protein kinases ATP-binding region signature. 85 107 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07548 Vivi-Chr2 220611400 220614120 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07548 553 691 Receptor kinase-like Gene Family AT3G58690 31.250 2.00e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Vivi2g07548 Pkinase 1.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07548 - - tpra:123899844 1184.86