Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07545 ATGGATATGGCTGATCAAAAAAGGAAAAGCACAGGTCGGAAAAAGATTGAGATCAAGAAAGTTGAGAAAGAATCCAACAAACAAGTCACATTCTCAAAAAGAAGACAAGGTTTATTTAAAAAAGCAAGTGAACTTTGCATCTTATGCGATGTTCATGCATCCATCATTGTTTTTTCTGGTGCTCACAAGCTCTTTTCGTTCGGCCATCCCGACACCGACTCAATTGTCAACAGTTATGTCAACGGAACTCGCGAGTTCGAGAGATCAAAGTTAGGAGAAAGTTCTTTGATTTATGAAGAGTATAATAAACAATATGGAGAAGCATTGAAGGAGTTGGAGATGGAGAAGAAGGAACTTGTGGAAGTTGAAAAATTGGCTAGGGTTTCTAAAAGAGTTGATTGGTGGAATGAAGATATTGATAATATGAGTCATGATCAACTTCAACAGTTTATGGTGTCTCTTTATGAGCTTAGAGGTAAGCTTTATGAAAGAGATCATCAACGTATGATGGAGCTTGCCATGTTGAAGAATTATTAG 537 0.3706 MDMADQKRKSTGRKKIEIKKVEKESNKQVTFSKRRQGLFKKASELCILCDVHASIIVFSGAHKLFSFGHPDTDSIVNSYVNGTREFERSKLGESSLIYEEYNKQYGEALKELEMEKKELVEVEKLARVSKRVDWWNEDIDNMSHDQLQQFMVSLYELRGKLYERDHQRMMELAMLKNY 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07545 178 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Vivi2g07545 178 FunFam Agamous-like MADS-box protein AGL62 23 89 - -
Vivi2g07545 178 SUPERFAMILY SRF-like 12 82 IPR036879 GO:0003677|GO:0046983
Vivi2g07545 178 Gene3D - 23 107 IPR036879 GO:0003677|GO:0046983
Vivi2g07545 178 Coils Coil 98 125 - -
Vivi2g07545 178 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Vivi2g07545 178 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Vivi2g07545 178 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Vivi2g07545 178 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Vivi2g07545 178 PANTHER MADS BOX PROTEIN 13 163 - -
Vivi2g07545 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07545 Vivi-Chr2 220598088 220598774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07545 10 158 Type I MADS-box Gene Family AT2G24840 45.455 2.07e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi2g07545 SRF-TF 1.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07545 - - cam:101502875 202.601