Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07534 ATGAAGAACAACAACCAAAACCAAAGCCTCGCTCGCATGTTTTCAAATCCACTCAGCGAGATCCAAACCAATAATACTCGTCGTAGTTGCAGCAACATCGTAACAGACAACAAAGAAAACACCAATGTCAATGTTGTTCCTTCTCTTCCAAAATCCAAATCATTATCAACCAGAATTGTCAAGCCTTCTTCATTACAGTTCTGCATGCAAATCAATGATTCTTCTCACTTTTCCAACTCTCTCAAAATCTGGGACTACTCTGATTCCGAAGCTGCTCCTGCTTCCTCTTGGTCCACTTTACCTAACAAGTCTTTGATTTGTAGACCATTGCCTATAGATATTGGAAGATGTACATGTGTAATTGTCAAAGAACCCATCCCTAAGGGTCTCTCTGCAACCACATTCTTCTCTCTATATACCTACGAAGGTCAGGGACGGCAGAATAGGAAACTGGCTGTAGCCTGCCACAGGCGGCGGAGAAATGGAAGATCACAGTTCACAGTAGCTCAGAATGTAAAAGGATTACTCTCTTATTCCGACGATACTTTCCTCGGGACAGTAACGGCGAACCTCACTGGATCGAAATACAACATTTGGGATCAGAAACATCGTCCTAATTCCAAATCCAAGAGTAATCAGTCAAATTCAAAGCAGCCTCTTGCTGTTGTTGAGTATGTACCTACAATACCAACATGTACAGGAACTCATAGAAGTATCAAGGCATATATACCGAATCATCAATCTATGTCTTTCAAGAATACTTCACAGGTGCAACATATTAAGGGTTTACCACTGAATTGGAAGGGAAAGTTGGAGAAAGTTCATCAACTATACTCAAAGGATCCACTCTACAACAAGAGTACAAAGCAATTTGAGCTTGACTATAGAGATAAAGGAAGGACAGGACTTGTAATTCAGAAATCAGTTAAAAACTTTCAGCTCACTTTAGAGGAGAATGGGAAGCAGACAATTTTGCAGCTAGGGAGGGTGGCAAAGTCTAAGTTTGTTATGGACTATAGATATCCTTTGACTGGTTACCAGGCGTTTTCCATATGTTTGGCTTCTATTGATGCAAAGCTTTGTTGCATAGTGTAA 1095 0.4055 MKNNNQNQSLARMFSNPLSEIQTNNTRRSCSNIVTDNKENTNVNVVPSLPKSKSLSTRIVKPSSLQFCMQINDSSHFSNSLKIWDYSDSEAAPASSWSTLPNKSLICRPLPIDIGRCTCVIVKEPIPKGLSATTFFSLYTYEGQGRQNRKLAVACHRRRRNGRSQFTVAQNVKGLLSYSDDTFLGTVTANLTGSKYNIWDQKHRPNSKSKSNQSNSKQPLAVVEYVPTIPTCTGTHRSIKAYIPNHQSMSFKNTSQVQHIKGLPLNWKGKLEKVHQLYSKDPLYNKSTKQFELDYRDKGRTGLVIQKSVKNFQLTLEENGKQTILQLGRVAKSKFVMDYRYPLTGYQAFSICLASIDAKLCCIV 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07534 364 MobiDBLite consensus disorder prediction 199 219 - -
Vivi2g07534 364 Gene3D Tubby Protein; Chain A 99 363 IPR025659 -
Vivi2g07534 364 SUPERFAMILY Tubby C-terminal domain-like 94 362 IPR025659 -
Vivi2g07534 364 PANTHER TUBBY-RELATED 76 361 - -
Vivi2g07534 364 PRINTS Tubby superfamily signature 300 316 IPR000007 -
Vivi2g07534 364 PRINTS Tubby superfamily signature 341 363 IPR000007 -
Vivi2g07534 364 PRINTS Tubby superfamily signature 183 207 IPR000007 -
Vivi2g07534 364 PRINTS Tubby superfamily signature 320 339 IPR000007 -
Vivi2g07534 364 Pfam Tub family 108 357 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07534 Vivi-Chr2 220431740 220433614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07534 60 257 TUB Transcription Factor Family AT1G16070 53.738 2.09e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vivi2g07534 Tub 2.9e-43 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07534 K19600 - cave:132188154 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07534 2 220431740 220433614 Vivi2g07534 2 220431740 220433614 ECH