Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07529 ATGACTGTAGTTGAGACATATGTTGGGAGGAAGAGATTAAATCCACCAGATGTCTCACCAAAATTGCATCCAGAAGTTTTATCTCTGATAAATGAAGGCATAGCGCAAAACACAACTGGCAATATTTTCATTCCTAAGTTGGGAATGAATTTTGAACTTATCAGATCAAGTTCAAAGGTTCTCCATGTCTTCCCCTTTAATTCTGAGAAAAAGAGAGGTGGCGTGGCTGTGAAACGGGCGGACTCTGGAGTGCATATACATTGGAAAGGAGCCGCTGAGATAGTTTTAGGAACGTGTACCCAATATATTGATTCAGATGGTCACCCGCAATCTATTGAAAAAGAGAAGGCATTCTTCAAGAAGGCGATTAATGACATGGCTACTCAGAGCTTGCGCTGCGTTGCTATTGCATACAGATCATACAAATTGGACAAAATTCCGTCCAAGGAGGAGGATTTAGACCAATGGACCTTACCTGATGACGAGCTTGTATTACTTGCTCTTGTTGGAATAAAGGATCCTTGTCGCCCCGGAGTCAAAGAAGCTGTAAGATTATGCACTGAGGCTGGTGTTAAGGTACGCATGGTTACTGGGGACAATCTTCAAACAGCAAAAGCAATAGCTTTGGAGTGCGGAATATTGGTTTCAATTGAAGAGGCAGTTGGACCAAATATAATTGAAGGAAAGACATTCCGTGAACTATCTGAAACAGAAAGGGAAAAAGTTGCTATGAAAATAACTGTGATGGGAAGATCATCTCCAAATGACAAGCTTTTGCTCGTGCAAGCACTGCGTAAAGGAGGTGAAGTTGTTGCTGTCACAGGAGATGGCACTAATGATGCTCCTGCTCTTCATGAGGCAGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTAGCAAAAGAAAGCTCGGATATTATAATCCTGGATGATAACTTTGCATCAGTAGTGAAGGTTGTTCGCTGGGGACGTTCTGTTTATGCAAATATTCAGAAATTTATTCAGTTCCAGCTCACTGTAAATGTTGCTGCTCTTTCTATAAATGTGGTTGCAGCAATATCTTCTGGTGATGTTCCTTTAAACGCAGTACAGCTTTTGTGGGTCAACCTTATTATGGACACACTTGGGGCTCTTGCTCTGGCTACCGAACCACCGACTGACAGCCTTATGAACAGATCACCAGTAGGCCGAAGGGAACCTCTTATAACAAATATCATGTGGAGGAACTTGCTTGTACAGGCTCTCTATCAAGTGACTGTTCTACTGATTCTTAACTTTGGTGGTGAAAGTATTATGCATCAAGATACTATGACACATACCTTAGAAGTGAAGAATACTATAATTTTCAACGCATTCGTCATGTGCCAGATATTCAATGAATTCAATGCTCGAAAGCCAGAAGGAATGAATGTCTTCAAGGGAGTGACTAAGAACCGTCTCTTTGTGGGAATTGTTGGAATGACCTTTATACTTCAGATAATCATCATCACGTTCCTTGGGAAGTTCACAACGACAGTGAGACTTAATTGGCAGCAGTGGCTTGCTTGTCTTTGTATTGGGCTGTTCAGCTGGCCACTTGCAATAATTGGAAAATTAATTCCAGTTTCTAAAACACCATGGTCACGACGAGTTGTGAGGGCATTTAGGCGCTTGAAGAAGACCCGGACTGCATAA 1677 0.4186 MTVVETYVGRKRLNPPDVSPKLHPEVLSLINEGIAQNTTGNIFIPKLGMNFELIRSSSKVLHVFPFNSEKKRGGVAVKRADSGVHIHWKGAAEIVLGTCTQYIDSDGHPQSIEKEKAFFKKAINDMATQSLRCVAIAYRSYKLDKIPSKEEDLDQWTLPDDELVLLALVGIKDPCRPGVKEAVRLCTEAGVKVRMVTGDNLQTAKAIALECGILVSIEEAVGPNIIEGKTFRELSETEREKVAMKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALSINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMNRSPVGRREPLITNIMWRNLLVQALYQVTVLLILNFGGESIMHQDTMTHTLEVKNTIIFNAFVMCQIFNEFNARKPEGMNVFKGVTKNRLFVGIVGMTFILQIIIITFLGKFTTTVRLNWQQWLACLCIGLFSWPLAIIGKLIPVSKTPWSRRVVRAFRRLKKTRTA 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07529 558 PANTHER CATION TRANSPORTING ATPASE 1 536 - -
Vivi2g07529 558 Gene3D - 175 319 IPR023214 -
Vivi2g07529 558 FunFam Calcium-transporting ATPase 167 319 - -
Vivi2g07529 558 Pfam haloacid dehalogenase-like hydrolase 162 288 - -
Vivi2g07529 558 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 1 171 IPR023299 GO:0000166
Vivi2g07529 558 Gene3D - 320 525 - -
Vivi2g07529 558 NCBIfam HAD-IC family P-type ATPase 240 354 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi2g07529 558 PRINTS P-type cation-transporting ATPase superfamily signature 167 178 - -
Vivi2g07529 558 PRINTS P-type cation-transporting ATPase superfamily signature 189 199 - -
Vivi2g07529 558 PRINTS P-type cation-transporting ATPase superfamily signature 298 310 - -
Vivi2g07529 558 PRINTS P-type cation-transporting ATPase superfamily signature 274 293 - -
Vivi2g07529 558 Gene3D - 52 174 IPR023299 GO:0000166
Vivi2g07529 558 NCBIfam calcium-translocating P-type ATPase, PMCA-type 47 536 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vivi2g07529 558 SUPERFAMILY HAD-like 116 379 IPR036412 -
Vivi2g07529 558 Pfam Cation transport ATPase (P-type) 43 101 - -
Vivi2g07529 558 FunFam Calcium-transporting ATPase 291 538 - -
Vivi2g07529 558 Pfam Cation transporting ATPase, C-terminus 359 534 IPR006068 -
Vivi2g07529 558 SUPERFAMILY Calcium ATPase, transmembrane domain M 324 539 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07529 Vivi-Chr2 220340064 220348709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07529 1 558 Primary Pumps ATPases AT3G21180 73.883 0.0 871
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07529 K01537 - gmx:100817367 913.679