Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07520 ATGGCCTCTCAACAAGATAACCAAATTATTTTCAGATCCAAACTTCCTGACATAAACATCCCCAATCATCTTCCCCTTCATTCCTATTGCTTTCAAAATCTCTCTCAATTTGCTTCACATCCATGCCTCATCAATGCCCCCACCGGAAAACTCTACACCTACTCCGACGTAGAAATCACCTCCCGCAAAGTTGCCTCCGGTCTCAACAAGTTGGGAATCCAACAAGGCGATGTCATCATGATCCTCCTCCCTAATTCCCCTGAATTCATCTTCTCCTTTCTCGCCGTGTCTTATCTCGGCGCCATATCCACCGCAGCCAATCCTTTCTTCACCGCGCCGGAGATTGAAAAGCAAGCAAAAGCCTCCAACGCCAAATTGATCATAACGCAAGCATGTTACTACGACAAAGTGAAGGAGTTATTAAATCATCACAAAGTAGTTTTGATAGATGCTGATAATAACAATAACAATAACAACAATGTTCATTTCTCAACGCTAACCGATGCCGACGAGAAAGACTTACCGGAAGCAAATATCCAACCTGACGACGTGGTGGCGCTTCCGTATTCCTCCGGAACAACCGGCTTACCAAAAGGAGTAATGTTAACGCACAAAGGAATGGTAACTAGCATAGCGCAACAAGTGGATGGAGAGAATCCAAATCTTTATTACACCAATGAGGATGTGATTCTCTGTGTTCTTCCTCTTTTTCATATTTACTCTCTCAACTCAGTTTTACTGTGTGGACTCAGAGCCAAAGCTACCATTTTACTAATGCCAAAATTCGACATAAATGCGTTGTTAAGTCTGGTTAACAAACACCGCGTGACGGTTGCACCGCTTGTTCCTCCGATCGTGTTGGCCATAGCAAAGTCACCGGATCTTAATAAGTATGATTTGTCTTCCATTAGAATATTGAAGTGCGGTGGTGCTCCGCTCGGGAAAGAACTGGAAGAGAGTGTTAGGGCCAAATTCCCGAAAGCCATTCTTGGACAGGGATACGGAATGACTGAGGCAGGACCAGTGTTAACAATGAGTTTAGCATTTGCTAAAGAAGCTTTGAATGTAAAAGCAGGTGCGTGTGGAACCGTTGTTAGAAATGCAGAGATGAAGATTGTGGATCCTGAAACTGGTAACTCTTTACCTTCAAATAAATCAGGTGAAATCTGCATCAGAGGCAACCAAATCATGAAAGGTTATCTTAATGATTTGGAGGCAACAGAGAGAACAATAGACAAAGAAGGCTGGTTGCATACCGGTGATGTTGGATACATTGATGAAGATGATGAGTTATTCATTATTGATAGATTGAAGGAATTGATCAAATACAAAGGTTTTCAAGTTGCTCCAGCTGAACTTGAAGCTCTTCTTCTTTCTCATCACAAAATCTCTGATGCTGCTGTTGTTGCAATGAATGATGAGGCTGCTGGAGAGGTACCAGTTGCATTTGTGGTGAGATCAAATGGTTACACTGACTTAACTGAAGATGAAATTAAACAGTTTATCTCTAAACAGGTGGTGTTTTACAAAAGAATAAATAAAGTATTCTTCATTGATGCAATTCCCAAGTCACCCTCTGGAAAAATCTTGCGTAAAGATCTTAGAGCAAAGTTAGCAGCTTGTGATCCAAATTGA 1635 0.4171 MASQQDNQIIFRSKLPDINIPNHLPLHSYCFQNLSQFASHPCLINAPTGKLYTYSDVEITSRKVASGLNKLGIQQGDVIMILLPNSPEFIFSFLAVSYLGAISTAANPFFTAPEIEKQAKASNAKLIITQACYYDKVKELLNHHKVVLIDADNNNNNNNNVHFSTLTDADEKDLPEANIQPDDVVALPYSSGTTGLPKGVMLTHKGMVTSIAQQVDGENPNLYYTNEDVILCVLPLFHIYSLNSVLLCGLRAKATILLMPKFDINALLSLVNKHRVTVAPLVPPIVLAIAKSPDLNKYDLSSIRILKCGGAPLGKELEESVRAKFPKAILGQGYGMTEAGPVLTMSLAFAKEALNVKAGACGTVVRNAEMKIVDPETGNSLPSNKSGEICIRGNQIMKGYLNDLEATERTIDKEGWLHTGDVGYIDEDDELFIIDRLKELIKYKGFQVAPAELEALLLSHHKISDAAVVAMNDEAAGEVPVAFVVRSNGYTDLTEDEIKQFISKQVVFYKRINKVFFIDAIPKSPSGKILRKDLRAKLAACDPN 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07520 544 FunFam 4-coumarate--CoA ligase 2 439 541 - -
Vivi2g07520 544 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
Vivi2g07520 544 FunFam Long-chain-fatty-acid--CoA ligase FadD 12 438 - -
Vivi2g07520 544 Gene3D - 2 437 IPR042099 -
Vivi2g07520 544 CDD 4CL 20 534 - -
Vivi2g07520 544 Gene3D - 438 540 IPR045851 -
Vivi2g07520 544 SUPERFAMILY Acetyl-CoA synthetase-like 12 540 - -
Vivi2g07520 544 Pfam AMP-binding enzyme 33 443 IPR000873 -
Vivi2g07520 544 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 6 536 - -
Vivi2g07520 544 Pfam AMP-binding enzyme C-terminal domain 452 528 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07520 Vivi-Chr2 220182097 220191572 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07520 1 506 Monolignol Biosynthesis Gene Families AT1G51680 67.961 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07520 K01904 - qsa:O6P43_027979 850.892