Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07517 ATGTATTCCAAATCCAATTATGCTCCTTTTCAAACACCAACAGCTGGAGGAGGAGGAGCACCAATAATTGGAATAATTCCAATTACACATTGGAACAAATTACGGCCAATACAACATTTGAACCAGAACCAGTTACGGCCAATACAGGGATTGAAAGAAGGATGGTTTGATGGAGGAAGCATTGCTTTTGCATTTATGCTCGTCATTGTAGTTACAGCTGTCAGTGATTATCGACAATCTTTGCAGTTTCAGAACTTGAATGCAGAAAAACAAAATATACAATTGGAGGCCATGAGAGGTGGTAGAACAATAAAAATATCGATATTTGAAATTGTTGTTAGTGATGTACTGCCCCTTAAAATAGGAGATCAGGTTCCTGCTGACGGAGTTTTAATTACTGGTCACTCACTTGCCATTGATGAATCCAGTATGACTGGGGAAAGCAAGATTGTTCACAAGGATCAAAAAGCACCATTTTTAATGTCAGGTTGCAAAGTAGCAGATGGAGTTGGTTCTATGCTGGTAACTAGTGTTGGTATAAATACTGAGTGGGGATTGTTGATGGCAACTATCTCAGAAGATACCGGAGAAGAGACTCCCTTACAGGTACGATTGAATGGAGTAGCAACTTTTATTGGTATTGTTGGGCTTACTGTAGCTGCAGCTGTTCTTACAGTCCTCTTGGGAAGATATTTTTCTGGCCACACGAAAGATTTAACTGGAAAAGTGCAATTTGTTGCGGGAGAGACTAAAATCAGTGACGCTGTTGACGCATGCATCAAAATTTTTACCATTGCAGTAACAATTGTGGTTGTTGCAGTGCCAGAAGGTCTACCTTTAGCAGTTACCTTAACCCTGGCATACTCGATGCGGAAGATGATGGCAGACAAAGCCTTGGTGCGAAGGCTGTCAGCTTGCGAAACTATGGGTTCTGCTACGACAATCTGCAGTGATAAAACTGGAACCTTGACCTTAAACCAGAGTGAAAATAGAGACTTGTGGTGA 1005 0.4109 MYSKSNYAPFQTPTAGGGGAPIIGIIPITHWNKLRPIQHLNQNQLRPIQGLKEGWFDGGSIAFAFMLVIVVTAVSDYRQSLQFQNLNAEKQNIQLEAMRGGRTIKISIFEIVVSDVLPLKIGDQVPADGVLITGHSLAIDESSMTGESKIVHKDQKAPFLMSGCKVADGVGSMLVTSVGINTEWGLLMATISEDTGEETPLQVRLNGVATFIGIVGLTVAAAVLTVLLGRYFSGHTKDLTGKVQFVAGETKISDAVDACIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQSENRDLW 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07517 334 SUPERFAMILY Calcium ATPase, transmembrane domain M 54 310 IPR023298 -
Vivi2g07517 334 NCBIfam HAD-IC family P-type ATPase 256 329 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi2g07517 334 Gene3D - 71 168 - -
Vivi2g07517 334 PRINTS Sodium/potassium-transporting ATPase signature 309 330 - -
Vivi2g07517 334 PRINTS Sodium/potassium-transporting ATPase signature 59 79 - -
Vivi2g07517 334 Pfam E1-E2 ATPase 95 294 - -
Vivi2g07517 334 FunFam Calcium-transporting ATPase 71 192 - -
Vivi2g07517 334 PANTHER CATION TRANSPORTING ATPASE 49 334 - -
Vivi2g07517 334 SUPERFAMILY Calcium ATPase, transduction domain A 96 189 IPR008250 -
Vivi2g07517 334 ProSitePatterns E1-E2 ATPases phosphorylation site. 318 324 IPR018303 -
Vivi2g07517 334 Gene3D - 169 330 - -
Vivi2g07517 334 PRINTS P-type cation-transporting ATPase superfamily signature 140 154 - -
Vivi2g07517 334 PRINTS P-type cation-transporting ATPase superfamily signature 316 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07517 Vivi-Chr2 220113615 220120017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07517 49 327 Primary Pumps ATPases AT3G21180 85.663 1.97e-153 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07517 K01537 - vvo:131651368 600.127