Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07516 ATGCTTGTTTGGTTGTTTGTTGATTCCATTGCATTGCATTGCATTCCATTCACTAACAATTTGCAATTGCAAAGAGGGATTAGGGATTTGCATGCGAAGATGAGCGATAGCATGAAAAACATGGCCACGGGTTCCACATCCCGCGGTTCTAATGCTTCCTCCAATGGCCTCCTCACCGTCACCATTACCGACACCACCACCCCTCGCCGCAATGACGATGAAGATGAAGACGACCTCCTCGTTGATCCCGACGATCCTTTCGACATCACCCAAACCAAAAATGCTCCTCCCGAGACCCTCAAACGTTGGCGACAAGCTGCATTTGTTCTCAATGCCTCGAGGCGTTTTCGATACACTCTTGACTTGAAAAAGGAAGAGGAAAAAGAGCAAAAGAAAAGCATGATTCGAGCTCATGCCCAAGTCATCAGAGCAGCTTTGCTTTTCAGATTGGCCGGCGAACGTCAACTAGTCACAAGTACAACAGTCGCACCAGCAACTCCAGGTGGTGACTATACGGTTGGACTTGAACAACTTGTTTCAATGTCCAAGAATCAAAATGTTTCCGCTTTACAACAATATGGAGGGGTCAAAGGCTTATCCAATTTTCTAAAATCAGATCTAGATAAAGGGATTATTGGAGATGAAGCTGATCTATCAAAGAGGAAAAATGCATTTGGAACTAATACATACCCTCGCAAAAAGGGTAAAGGTTTATGGAGGTTCCTATGGGAAGCTTGGCAAGATCTGACTCTTATAATATTGATTATAGCAGCTGCAGTGTCATTAGTGCTTGGAATAAAAACAGAGGGATTGAAAGAAGGATGGTTTGATGGAGGAAGCATTGCTTTTGCAGTTATGCTCGTCATTGTAGTTACAGCTGTCAGTGATTATCGACAATCTTTGCAGTTTCAGAACTTGAATGCAGAAAAACAAAATATACAATTGGAGGCCATGAGAGGTGGTAGAACAATAAAAATATCGATATTTGAAATTGTTGTTGGTGATGTACTGCCCCTTAAAATAGGAGATCAGGTTCCTGCTGACGGAGTTTTAATTACTGGTCACTCACTTGCCATTGATGAATCCAGTATGACTGGGGAAAGCAAGATTGTTCACAAGGATCAAAAAGCACCATTTTTAATGTCAGGTTGCAAAGTAGCAGATGGAGTTGGTTCTATGCTGGTAACTAGTGTTGGTATAAATACTGAGTGGGGATTGTTGATGGCAACTATCTCAGAAGATACCGGAGAAGAGACTCCCTTACAGGTACGATTGAATGGAGTAGCAACTTTTATTGGTATTGTTGGGCTTACTGTAGCTGCAGCTGTTCTTACAGTCCTCTTGGGAAGATATTTTTCTGGCCACACGAAAGATTTAACTGGAAAAGTGCAATTTGTTGCGGGAGAGACTAAAATCAGTGACGCTGTTGACGCATGCATCAAAATTTTTACCATTGCAGTAACTATTGTGGTTGTTGCAGTGCCAGAAGGTCTACCTTTAGCAGTTACCTTAACCCTGGCATACTCGATGCGGAAGATGATGGCAGACAAAGCCTTGGTGCGAAGGCTGTCAGCTTGCGAAACTATGGGTTCTGCTACGACAATTTGCAGTGATAAAACTGGAACCTTGACCTTAAACCAGATGACTGTAGTTGAGACATATGTTGGGAGGAAGAGATTAAATCCACCAGATGTCTCACCAAAATTGCATCCAGAAGTTTTATCTCTGATAAATGAAGGCATAGCGCAAAACACAACTGGCAATATTTTCATTCCTAAAGATGGTGGAGAGACAGAGGTTTCGGGATCTCCTACAGAGAAGGCAATTCTATCTTGGGCTATGAAGTTGGGAATGAATTTTGAACTTATCAGATCAAGTTCAAAGGTTCTCCATGTCTTCCCCTTTAATTCTGAGAAAAAGAGAGGTGGCGTGGCTGTGAAACGGGCGGACTCTGGAGTGCATATACATTGGAAAGGAGCTGCTGAGATAGTTTTAGGAACGTGTACCCAATATATTGATTCAGATGGTCACCCGCAATCTATTGAAAAAGAGAAGGCATTCTTCAAGAAGGCGATTAATGACATGGCTACTCAGAGCTTGCGCTGCGTTGCTATTGCATACAGATCATACAAATTGGACAAAATTCCGTCCAAGGAGGAGGATTTAGACCAATGGACTTTACCTGATGACGAGCTTGTATTACTTGCTCTTGTTGGAATAAAGGATCCTTGTCGCCCCGGAGTCAAAGAAGCTGTAAGATTATGCACTGAGGCTGGTGTTAAGGTACGCATGGTTACTGGGGACAATCTTCAAACAGCAAAAGCAATAGCTTTGGAGTGCGGAATATTGGTTTCAATTGAAGAGGCAGTTGAACCAAATATAATTGAAGGAAAGACATTCCGTGAACTATCTGAAACAGAAAGGGAAAAAGTTGCTATGAAAATAACTGTGATGGGAAGATCATCTCCAAATGACAAGCTTTTGCTTGTGCAAGCACTGCGTAAAGGAGGTGAAGTTGTTGCTGTCACAGGAGATGGCACTAATGATGCTCCTGCTCTTCATGAGGCAGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTAGCAAAAGAAAGCTCGGATATTATAATCCTGGATGATAACTTCGCATCAGTAGTGAAGGTTGTTCGCTGGGGACGTTCTGTTTATGCAAATATTCAGAAATTTATTCAGTTCCAGCTCACTGTAAATGTTGCTGCTCTTTCTATAAATGTGGTTGCAGCAATATCTTCTGGTGATGTTCCTTTAAACGCAGTACAGCTTTTGTGGGTCAACCTTATTATGGACACACTTGGGGCTCTTGCTCTGGCTACCGAACCACCGACTGACAGCCTTATGAACAGATCACCAGTAGGCCGAAGGGAACCTCTTATAACAAATATCATGTGGAGGAACTTGCTTGTACAGGCTCTCTATCAAGTGACTGTACTACTGATTCTTAACTTTGGTGGTGAAAGTATTCTGCATCAAGATACTATGACACATACCTTAGAAGTGAAGAATACTATAATTTTCAACGCATTCGTCATGTGCCAGATATTCAATGAATTCAATGCTCGAAAGCCAGAAGGAATGAATGTCTTCAAGGGAGTGACTAAGAACCGTCTCTTTGTGGGAATTGTTGGAATGACCTTTATACTTCAGATAATCATCATCACGTTCCTTGGGAAGTTCACAACGACAGTGAGACTTAATTGGCAGCAGTGGCTTGCTTGTCTTTGTATTGGGCTGTTCAGCTGGCCACTTGCAATAATTGGAAAATTAATTCCAGTTTCTAAAACACCATGGTCACGACGAGTTGTGAGGGCATTTAGGCGCTTGAAGAAGACCCGGACTGCATAA 3384 0.4238 MLVWLFVDSIALHCIPFTNNLQLQRGIRDLHAKMSDSMKNMATGSTSRGSNASSNGLLTVTITDTTTPRRNDDEDEDDLLVDPDDPFDITQTKNAPPETLKRWRQAAFVLNASRRFRYTLDLKKEEEKEQKKSMIRAHAQVIRAALLFRLAGERQLVTSTTVAPATPGGDYTVGLEQLVSMSKNQNVSALQQYGGVKGLSNFLKSDLDKGIIGDEADLSKRKNAFGTNTYPRKKGKGLWRFLWEAWQDLTLIILIIAAAVSLVLGIKTEGLKEGWFDGGSIAFAVMLVIVVTAVSDYRQSLQFQNLNAEKQNIQLEAMRGGRTIKISIFEIVVGDVLPLKIGDQVPADGVLITGHSLAIDESSMTGESKIVHKDQKAPFLMSGCKVADGVGSMLVTSVGINTEWGLLMATISEDTGEETPLQVRLNGVATFIGIVGLTVAAAVLTVLLGRYFSGHTKDLTGKVQFVAGETKISDAVDACIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVETYVGRKRLNPPDVSPKLHPEVLSLINEGIAQNTTGNIFIPKDGGETEVSGSPTEKAILSWAMKLGMNFELIRSSSKVLHVFPFNSEKKRGGVAVKRADSGVHIHWKGAAEIVLGTCTQYIDSDGHPQSIEKEKAFFKKAINDMATQSLRCVAIAYRSYKLDKIPSKEEDLDQWTLPDDELVLLALVGIKDPCRPGVKEAVRLCTEAGVKVRMVTGDNLQTAKAIALECGILVSIEEAVEPNIIEGKTFRELSETEREKVAMKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALSINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMNRSPVGRREPLITNIMWRNLLVQALYQVTVLLILNFGGESILHQDTMTHTLEVKNTIIFNAFVMCQIFNEFNARKPEGMNVFKGVTKNRLFVGIVGMTFILQIIIITFLGKFTTTVRLNWQQWLACLCIGLFSWPLAIIGKLIPVSKTPWSRRVVRAFRRLKKTRTA 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07516 1127 NCBIfam calcium-translocating P-type ATPase, PMCA-type 182 1105 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vivi2g07516 1127 SUPERFAMILY Calcium ATPase, transduction domain A 316 409 IPR008250 -
Vivi2g07516 1127 Gene3D - 546 743 IPR023299 GO:0000166
Vivi2g07516 1127 FunFam Calcium-transporting ATPase 860 1107 - -
Vivi2g07516 1127 MobiDBLite consensus disorder prediction 39 96 - -
Vivi2g07516 1127 SFLD p-type atpase 518 895 IPR044492 -
Vivi2g07516 1127 MobiDBLite consensus disorder prediction 39 66 - -
Vivi2g07516 1127 Pfam Cation transporter/ATPase, N-terminus 194 261 IPR004014 -
Vivi2g07516 1127 FunFam Calcium-transporting ATPase 736 888 - -
Vivi2g07516 1127 Pfam E1-E2 ATPase 316 514 - -
Vivi2g07516 1127 NCBIfam HAD-IC family P-type ATPase 809 923 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi2g07516 1127 NCBIfam HAD-IC family P-type ATPase 476 558 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi2g07516 1127 Gene3D - 533 888 IPR023214 -
Vivi2g07516 1127 PANTHER CATION TRANSPORTING ATPASE 139 1105 - -
Vivi2g07516 1127 SUPERFAMILY Calcium ATPase, transmembrane domain M 193 1108 IPR023298 -
Vivi2g07516 1127 FunFam Calcium-transporting ATPase 95 151 - -
Vivi2g07516 1127 Gene3D - 216 412 - -
Vivi2g07516 1127 ProSitePatterns E1-E2 ATPases phosphorylation site. 538 544 IPR018303 -
Vivi2g07516 1127 FunFam Calcium-transporting ATPase 244 301 - -
Vivi2g07516 1127 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 543 740 IPR023299 GO:0000166
Vivi2g07516 1127 FunFam Calcium-transporting ATPase 292 412 - -
Vivi2g07516 1127 Pfam haloacid dehalogenase-like hydrolase 533 857 - -
Vivi2g07516 1127 SMART Cation_ATPase_N_a_2 192 266 IPR004014 -
Vivi2g07516 1127 FunFam Calcium-transporting ATPase 546 743 - -
Vivi2g07516 1127 Pfam Cation transporting ATPase, C-terminus 928 1103 IPR006068 -
Vivi2g07516 1127 FunFam Calcium-transporting ATPase 9 plasma membrane-type 390 560 - -
Vivi2g07516 1127 SUPERFAMILY HAD-like 534 948 IPR036412 -
Vivi2g07516 1127 CDD P-type_ATPase_Ca_PMCA-like 218 976 - -
Vivi2g07516 1127 PRINTS P-type cation-transporting ATPase superfamily signature 843 862 - -
Vivi2g07516 1127 PRINTS P-type cation-transporting ATPase superfamily signature 736 747 - -
Vivi2g07516 1127 PRINTS P-type cation-transporting ATPase superfamily signature 758 768 - -
Vivi2g07516 1127 PRINTS P-type cation-transporting ATPase superfamily signature 360 374 - -
Vivi2g07516 1127 PRINTS P-type cation-transporting ATPase superfamily signature 536 550 - -
Vivi2g07516 1127 PRINTS P-type cation-transporting ATPase superfamily signature 867 879 - -
Vivi2g07516 1127 PRINTS Sodium/potassium-transporting ATPase signature 915 936 - -
Vivi2g07516 1127 PRINTS Sodium/potassium-transporting ATPase signature 529 550 - -
Vivi2g07516 1127 PRINTS Sodium/potassium-transporting ATPase signature 279 299 - -
Vivi2g07516 1127 PRINTS Sodium/potassium-transporting ATPase signature 655 673 - -
Vivi2g07516 1127 Gene3D - 244 1093 - -
Vivi2g07516 1127 Gene3D - 97 149 - -
Vivi2g07516 1127 Pfam Ca2+-ATPase N terminal autoinhibitory domain 84 127 IPR024750 GO:0005516
Vivi2g07516 1127 SFLD Haloacid Dehalogenase 518 895 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07516 Vivi-Chr2 220032759 220048248 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07516 50 1127 Primary Pumps ATPases AT3G21180 76.151 0.0 1662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07516 K01537 - gmx:100817367 1741.09