Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07514 ATGCAATTAGCTTCAAACTCTGACAAGGAACAATCTTCAGAGTCCCAACCCATATTGAATCACTCCTCCTGTGAAATTATTCCTGACAATAACTCTGATGATGATGATGACGATGATATAGAGAATGTTCGCGTTGATCGTCTTCTAATTACAGATCAGCCGCAATGCCGAATATGCCTTGATTTTGAAGGAGAAGACTTAATTGCCCCCTGCCATTGCAAAGGTACACAAAAATATGTCCATAGATCATGTTTGGATAACTGGAGATCTACCAAGGAGGGCTTTGCTTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGAGCAAATGTCCCAAAAGATCGCTGGTGGTTGAGGTTGAAATTTCAGTTCCTTGTTGCCAGAGATCATGCTTTCATTTTCATCACTGTCCAACTCGTTGTTGCTTTCTTGGGGGTGCTTATTTACAAATTCTATGGGGATGAACTTAGAGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCCGTTCTCGCCATTATTTTGGTGGGTTTGCTCTATGGCTTCTTTATAGCAATAATATGTGGCCAACGAATCAATGAACGTCACTACCACGTTCTTGCCAAACAAGAATTGACAAAGGAATATGTGGTAGAAGATCGAGAACATGTAAAGAATGTGCCCGAACTCGACCCCAGCCATGTCACAGAACTCAGGATGCTGGGCCTTTACTAG 732 0.4126 MQLASNSDKEQSSESQPILNHSSCEIIPDNNSDDDDDDDIENVRVDRLLITDQPQCRICLDFEGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPKDRWWLRLKFQFLVARDHAFIFITVQLVVAFLGVLIYKFYGDELREMFGYEEHPYGFYTMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07514 243 MobiDBLite consensus disorder prediction 1 21 - -
Vivi2g07514 243 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 176 243 - -
Vivi2g07514 243 CDD RING_CH-C4HC3_MARCH 56 104 - -
Vivi2g07514 243 SUPERFAMILY RING/U-box 52 107 - -
Vivi2g07514 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 116 IPR013083 -
Vivi2g07514 243 SMART ringv_2 55 104 IPR011016 GO:0008270
Vivi2g07514 243 ProSiteProfiles Zinc finger RING-CH-type profile. 48 110 IPR011016 GO:0008270
Vivi2g07514 243 Pfam RING-variant domain 56 103 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07514 Vivi-Chr2 220016476 220018159 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07514 1 202 C3H Transcription Factor Family AT1G50440 59.908 1.08e-84 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07514 - - gmx:100789593 441.81