Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07487 ATGGAGTCAGATCTTCATCAGCAGCAACAACCACAGGCCAATTCTTCAGGTTTAACACGCTACCGATCAGCACCAAGTTCATATTTCAACAACATCATTGACAAAGAATTCTACGAGCATGTTTTCAACCGACCTTCAAGTCCAGAAACAGAGCGAGTTTTTTCAAGGTTTATGAACAGTTTGGGTTCAGAAGATGATTTACTCGCTCAGAAAATCGCCGTTGAATCGACAGTAAAAGAAGAGGAGATTGTTAATGTTAACATTAACCAACATCACCAACAACAAGAACAACAACAACAAGAAGAACAGGAACGAGAACAAGAACACATGGTTCAACATAATTATGAACACTCTCATGGTTTTTATCAAACCTCAGTGATGCCACCTTTGCCAAACCAGAATGTTGTTTCTGGTTTGGATGGAGGTTTTTCAGTGGGAGTTAATAGGTTACAGCAGATGAAGAGTCATGGTGGGAATAATTCTAATCTTATTAGACACAGTAGTTCACCAGCTGGATTATTTTCTCAAATCAACATTGAAAATGGGTATGTTAGTATGAGAGGAATGGGAAATTTAGGAGCTGTTAATAGTTCTATGAAAGATGCAAAATTTTCTAGTGGAAGGAGTTTGAAGAATTCAGCAAGCTATTCATCAGGGATAATGTCAACAATAGCTGAAGTTGGGGACAAATGCAATGAAGAAAATAATCAAGAAAATGAAGTTTTTGGTGAAAGTCATCATGGTAACGATTATATCGCGGATTATCAGGTTGATACTTGGGATGATACTGAAATGATGTCTGAAAATGTTGGTGGTTTGAAAAGATTTAGAGATAGTGATTCAAAACAACAATTTTCTGCAGGTTTTAATGCAGCAGCAGTTCAGAATGAAACAGGAGGAGGACATTCGTCTTCTCCATTGGCTCATCAGTTGAGTATGCCAAATACTTCATCTGAGATGGCAGCTATTGAGAAGTTTCTGCATTTCTCAGATTCTGTTCCGATGAAAATTCGCGCTAAGCGAGGTTGTGCTACTCACCCAAGAAGCATAGCAGAAAGGGTTAGAAGGACTAAAATTAGCGAACGTATGAGGAAGCTACAAGATCTAGTCCCAAACATGGATAAGCAAACAAATACAGCAGATATGTTAGACTTGGCTGTGGATTACATCAAAGACCTTCAAAAGCAAGCTCAGAAGCTTCAAGATTGTCAAGCAAAGTGCACTTGTTCACACAAGAAGCACCAATAA 1248 0.3846 MESDLHQQQQPQANSSGLTRYRSAPSSYFNNIIDKEFYEHVFNRPSSPETERVFSRFMNSLGSEDDLLAQKIAVESTVKEEEIVNVNINQHHQQQEQQQQEEQEREQEHMVQHNYEHSHGFYQTSVMPPLPNQNVVSGLDGGFSVGVNRLQQMKSHGGNNSNLIRHSSSPAGLFSQINIENGYVSMRGMGNLGAVNSSMKDAKFSSGRSLKNSASYSSGIMSTIAEVGDKCNEENNQENEVFGESHHGNDYIADYQVDTWDDTEMMSENVGGLKRFRDSDSKQQFSAGFNAAAVQNETGGGHSSSPLAHQLSMPNTSSEMAAIEKFLHFSDSVPMKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQAQKLQDCQAKCTCSHKKHQ 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07487 415 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 52 411 - -
Vivi2g07487 415 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 405 IPR036638 GO:0046983
Vivi2g07487 415 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 393 IPR011598 GO:0046983
Vivi2g07487 415 Gene3D - 344 414 IPR036638 GO:0046983
Vivi2g07487 415 FunFam Transcription factor bHLH130 family 344 413 - -
Vivi2g07487 415 Coils Coil 88 108 - -
Vivi2g07487 415 MobiDBLite consensus disorder prediction 1 23 - -
Vivi2g07487 415 MobiDBLite consensus disorder prediction 295 315 - -
Vivi2g07487 415 CDD bHLH_AtbHLH_like 348 401 IPR045239 -
Vivi2g07487 415 SMART finulus 349 399 IPR011598 GO:0046983
Vivi2g07487 415 Pfam Helix-loop-helix DNA-binding domain 348 394 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07487 Vivi-Chr2 219661779 219664915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07487 6 410 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 37.681 7.31e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g07487 HLH 5.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07487 - - gmx:100805812 491.5