Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07479 ATGAACTCAAACAACTGGCTCTCCTTTCCACTTTCTCCAACTCATCCTTCTCCATTACAACCTCAATCTCATCATCAGCATCATTTTTCTCTTGGAACATTAGTCAATGACAACATGTTGGAAACCCCTTTCCAAAACCATGATTGGAATCTGATGAATACTCTCAGTCACAGTCACAATCACAATCACAGTACTAGCAACGAAGTTCCAAAGGTTGCAGATTTTCTTGGTGTGAACAGCAAGAGTACTACTGAAAATGAGTCAGATCTTGCAGCCTTTAATGAAATCAATAATCATTCTTCAGATAACTACTTCTTCATGCCACTACAAATCAACTCAGCTTTAGAACCAACTTCTAGCAATAGTTATGATCAATATCAAGAAAACGGTAACAATAATCTGCAGTCGTTGACATTATCAATGGGGAGTGGTACTAAAGATTCTACATGTGAAACCAGTGGCGAAAATAATAACACTATAGTTGAAGCAGCTGCACCTAAAAGGGCTTTGGATACCTTTGGCCAAAGAACATCAATTTATCGCGGTGTAACAAGACATAGATGGACCGGAAGATATGAAGCTCATCTTTGGGATAATACTTGTAGAAGAGAAGGACAATCAAGAAAAGGTCGCCAAGTCTATTTAGGTGGTTATGACAAAGAAGAAAAAGCAGCAAGAGCTTATGATTTAGCTGCACTAAAGTACTGGGGAACATCCACCACAACAAACTTTCCAATCAGTAACTATGAGAAGGAAGTTGAAGAAATGAAGAACATGACAAGACAAGAATTTGTTGCATCCATAAGAAGAAAAAGCAGTGGATTTTCAAGGGGTGCATCAATGTATCGCGGAGTCACAAGGCATCACCAACATGGAAGATGGCAAGCGAGAATCGGTCGAGTTGCAGGAAACAAAGATCTCTACTTAGGAACATTCAGTACTGAAGAAGAAGCTGCAGAAGCTTATGATATAGCTGCAATTAAGTTCAGAGGATTAAGCGCGGTAACAAACTTCGACATGAACCGTTACGAAGTGAAGGCGATTCTTGAAAGTAACACTCTTCCTATAGGAGGAGGTGCTGCGAAAAGGTTGAAAGAAGCACAAGCTCTAGAATGTTCTAGAAAAAGAGAACAAGAGATGGTAGCACTTCAATATGGACTAGGATCTTCAAGTTCAAGTAGGTTAGAATTACAAGGTTACCCTTTAATGCAATTTGAACAACAAACACATCATCAACAACAACAACAACAACAACCTTTGTTGACACTACAAAACCAGGAAGTATATCCGTCGTCGTTTCATGATCAGAGTTATTTACAAACTCAGCTTCAGTTGCATCAACAGCAACAAGGTGGATTTTACAGCTACAATGGTGATTATAGTATTCAGAATCATCCGGGTTTGATGGAGAATAATGATGGGTGTGGAGGGTATATTGGGAATAATAATAATAACAATGTTATGGGAGAAACAGCGGATTACGACATGTCTTCCGGAGGTTATGGAGGTTGGTCGGCGGGAGATTCCATGCAAGGTTCAAATGGAGGTGGTGGTGGTGTTTTCACAATGTGGAATGGTTTGAGTAATTAA 1590 0.395 MNSNNWLSFPLSPTHPSPLQPQSHHQHHFSLGTLVNDNMLETPFQNHDWNLMNTLSHSHNHNHSTSNEVPKVADFLGVNSKSTTENESDLAAFNEINNHSSDNYFFMPLQINSALEPTSSNSYDQYQENGNNNLQSLTLSMGSGTKDSTCETSGENNNTIVEAAAPKRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNTCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLSAVTNFDMNRYEVKAILESNTLPIGGGAAKRLKEAQALECSRKREQEMVALQYGLGSSSSSRLELQGYPLMQFEQQTHHQQQQQQQPLLTLQNQEVYPSSFHDQSYLQTQLQLHQQQQGGFYSYNGDYSIQNHPGLMENNDGCGGYIGNNNNNNVMGETADYDMSSGGYGGWSAGDSMQGSNGGGGGVFTMWNGLSN 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07479 529 ProSiteProfiles AP2/ERF domain profile. 281 339 IPR001471 GO:0003700|GO:0006355
Vivi2g07479 529 FunFam AP2-like ethylene-responsive transcription factor 280 341 - -
Vivi2g07479 529 FunFam AP2-like ethylene-responsive transcription factor ANT 178 247 - -
Vivi2g07479 529 MobiDBLite consensus disorder prediction 1 27 - -
Vivi2g07479 529 CDD AP2 178 247 IPR001471 GO:0003700|GO:0006355
Vivi2g07479 529 PRINTS Ethylene responsive element binding protein signature 180 191 IPR001471 GO:0003700|GO:0006355
Vivi2g07479 529 PRINTS Ethylene responsive element binding protein signature 321 341 IPR001471 GO:0003700|GO:0006355
Vivi2g07479 529 Gene3D AP2/ERF domain 281 341 IPR036955 GO:0003700|GO:0006355
Vivi2g07479 529 Gene3D AP2/ERF domain 179 247 IPR036955 GO:0003700|GO:0006355
Vivi2g07479 529 SUPERFAMILY DNA-binding domain 280 340 IPR016177 GO:0003677
Vivi2g07479 529 ProSiteProfiles AP2/ERF domain profile. 179 245 IPR001471 GO:0003700|GO:0006355
Vivi2g07479 529 Pfam AP2 domain 179 237 IPR001471 GO:0003700|GO:0006355
Vivi2g07479 529 Pfam AP2 domain 282 331 IPR001471 GO:0003700|GO:0006355
Vivi2g07479 529 SUPERFAMILY DNA-binding domain 178 247 IPR016177 GO:0003677
Vivi2g07479 529 CDD AP2 280 339 IPR001471 GO:0003700|GO:0006355
Vivi2g07479 529 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 66 436 - -
Vivi2g07479 529 SMART rav1_2 281 345 IPR001471 GO:0003700|GO:0006355
Vivi2g07479 529 SMART rav1_2 179 251 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07479 Vivi-Chr2 219418105 219420420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07479 1 525 AP2-EREBP Transcription Factor Family AT1G51190 60.000 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vivi2g07479 AP2 9.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07479 K09285 - gmx:100788471 602.438